Variant report
| Variant | rs55849950 |
|---|---|
| Chromosome Location | chr12:58073344-58073345 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000242990 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs34299538 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56318011 | 1.00[AMR][1000 genomes] |
| rs58824032 | 1.00[AMR][1000 genomes] |
| rs59476756 | 1.00[AMR][1000 genomes] |
| rs73334082 | 1.00[AMR][1000 genomes] |
| rs73335910 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73338222 | 1.00[AMR][1000 genomes] |
| rs73338246 | 1.00[AMR][1000 genomes] |
| rs73338249 | 1.00[AMR][1000 genomes] |
| rs73338250 | 1.00[AMR][1000 genomes] |
| rs73338252 | 1.00[AMR][1000 genomes] |
| rs73349954 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74094487 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1038741 | chr12:57877355-58174506 | Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 126 gene(s) | inside rSNPs | diseases |
| 2 | nsv541503 | chr12:57877355-58174506 | Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 126 gene(s) | inside rSNPs | diseases |
| 3 | nsv508676 | chr12:58045136-58098538 | Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 22 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
