Variant report

Variant	rs55850526
Chromosome Location	chr1:150733524-150733525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150731143..150734388-chr1:150735639..150737851,3	MCF-7	breast:
2	chr1:150730585..150733903-chr1:150734445..150737358,3	K562	blood:
3	chr1:150733435..150736065-chr1:150737703..150739768,2	K562	blood:

Variant related genes	Relation type
ENSG00000163131	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10305658	0.83[AMR][1000 genomes]
rs10305662	0.83[AMR][1000 genomes]
rs10305675	0.83[AMR][1000 genomes]
rs10305679	0.83[AMR][1000 genomes]
rs10305680	0.83[AMR][1000 genomes]
rs10305682	0.83[AMR][1000 genomes]
rs16839888	1.00[AMR][1000 genomes]
rs2867298	1.00[AMR][1000 genomes]
rs35831938	0.83[AMR][1000 genomes]
rs41496050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56014497	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57303926	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74124974	1.00[AMR][1000 genomes]
rs74127010	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127011	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127036	0.83[AMR][1000 genomes]
rs74127058	0.83[AMR][1000 genomes]
rs7513824	0.83[AMR][1000 genomes]
rs9325979	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv872417	chr1:150618632-150759979	Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv872418	chr1:150683512-150860471	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv872419	chr1:150699199-150738759	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1008381	chr1:150721254-150745558	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150704000-150736600	Weak transcription	Fetal Stomach	stomach
2	chr1:150711000-150735600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:150712000-150737800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:150715800-150736200	Weak transcription	Small Intestine	intestine
5	chr1:150716600-150737000	Weak transcription	Pancreas	Pancrea
6	chr1:150717200-150733600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr1:150720200-150736200	Weak transcription	Colonic Mucosa	Colon
8	chr1:150720600-150737800	Weak transcription	Brain Substantia Nigra	brain
9	chr1:150722400-150737000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr1:150723000-150738000	Weak transcription	Right Ventricle	heart
11	chr1:150724400-150737800	Weak transcription	Aorta	Aorta
12	chr1:150724600-150736200	Weak transcription	Gastric	stomach
13	chr1:150724600-150736400	Weak transcription	Esophagus	oesophagus
14	chr1:150727800-150734600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr1:150727800-150736200	Weak transcription	Adipose Nuclei	Adipose
16	chr1:150727800-150736200	Weak transcription	Lung	lung
17	chr1:150727800-150736400	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr1:150727800-150737000	Weak transcription	Thymus	Thymus
19	chr1:150728000-150734600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr1:150729200-150737600	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr1:150729800-150737000	Weak transcription	Spleen	Spleen
22	chr1:150730000-150736200	Weak transcription	Fetal Thymus	thymus
23	chr1:150730600-150735000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:150730600-150735000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr1:150730800-150738000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr1:150731000-150736200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr1:150731400-150734600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:150732200-150736200	Genic enhancers	Primary B cells from peripheral blood	blood
29	chr1:150732200-150737200	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
30	chr1:150732400-150737400	Transcr. at gene 5' and 3'	Primary monocytes fromperipheralblood	blood
31	chr1:150732800-150734200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
32	chr1:150733000-150733600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr1:150733000-150733600	ZNF genes & repeats	GM12878-XiMat	blood
34	chr1:150733000-150733800	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
35	chr1:150733000-150734000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:150733000-150734000	ZNF genes & repeats	Fetal Intestine Small	intestine
37	chr1:150733000-150734400	Weak transcription	Primary T cells from cord blood	blood
38	chr1:150733200-150733800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:150733200-150734400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr1:150733200-150734400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr1:150733200-150734400	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr1:150733200-150734600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr1:150733200-150735800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
44	chr1:150733200-150736200	Weak transcription	Liver	Liver
45	chr1:150733400-150734200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr1:150733400-150734400	Weak transcription	Primary hematopoietic stem cells	blood
47	chr1:150733400-150734400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr1:150733400-150735600	Weak transcription	Duodenum Mucosa	Duodenum
49	chr1:150733400-150735600	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr1:150733400-150735600	Weak transcription	Rectal Mucosa Donor 31	rectum

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