Variant report

Variant	rs558509314
Chromosome Location	chr13:52100957-52100958
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1797261	chr13:52100949-52139113	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52097600-52108600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr13:52098200-52101000	Enhancers	HepG2	liver
3	chr13:52098200-52106800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr13:52098800-52101000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr13:52098800-52106800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr13:52099000-52101000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr13:52099800-52106400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr13:52099800-52107000	Weak transcription	HMEC	breast
9	chr13:52100000-52101200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr13:52100200-52107000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr13:52100200-52113800	Weak transcription	NHDF-Ad	bronchial
12	chr13:52100600-52106800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:52100600-52113000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr13:52100800-52107000	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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