Variant report

Variant	rs55851047
Chromosome Location	chr4:7830791-7830792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:7822325..7825462-chr4:7828397..7830973,3	K562	blood:
2	chr4:7828803..7835270-chr4:7836618..7840776,8	K562	blood:
3	chr4:7828718..7832914-chr4:7842245..7845071,3	K562	blood:
4	chr4:7817490..7819833-chr4:7830199..7832039,2	K562	blood:
5	chr4:7817490..7820534-chr4:7830199..7832039,3	K562	blood:
6	chr4:7825242..7828581-chr4:7828624..7832177,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SORCS2-3	chr4:7824831-7831552	refGeneNc_1113_NR_026892

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12512093	0.85[AFR][1000 genomes]
rs12512881	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16841268	0.85[AFR][1000 genomes]
rs4074746	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs41264707	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56177309	0.85[AFR][1000 genomes]
rs56244096	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56264326	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61166235	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61562759	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62289296	0.81[ASN][1000 genomes]
rs62289297	0.85[ASN][1000 genomes]
rs73210848	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73797315	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1007319	chr4:7705550-7832097	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv537018	chr4:7705550-7832097	Genic enhancers Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	esv34140	chr4:7787936-8172491	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
6	esv2754386	chr4:7822449-7992909	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2756298	chr4:7822449-7992909	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv522369	chr4:7826824-7831977	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7819800-7834400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr4:7821200-7859000	Weak transcription	Aorta	Aorta
3	chr4:7824600-7834600	Genic enhancers	HUVEC	blood vessel
4	chr4:7825400-7839400	Weak transcription	Pancreas	Pancrea
5	chr4:7825600-7830800	Weak transcription	Psoas Muscle	Psoas
6	chr4:7825600-7852200	Weak transcription	Gastric	stomach
7	chr4:7825800-7854200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:7826000-7846000	Weak transcription	Stomach Mucosa	stomach
9	chr4:7826400-7833600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:7826600-7842400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:7826800-7831200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr4:7827000-7831400	Weak transcription	HepG2	liver
13	chr4:7827600-7832400	Genic enhancers	Fetal Muscle Leg	muscle
14	chr4:7827800-7830800	Enhancers	Placenta	Placenta
15	chr4:7827800-7831000	Genic enhancers	Fetal Stomach	stomach
16	chr4:7828000-7832400	Genic enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:7828200-7831000	Strong transcription	Brain Germinal Matrix	brain
18	chr4:7828800-7830800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr4:7828800-7833000	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr4:7828800-7833600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr4:7829000-7834200	Enhancers	Primary T cells fromperipheralblood	blood
22	chr4:7829200-7833400	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr4:7829400-7830800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:7829400-7830800	Enhancers	Brain Angular Gyrus	brain
25	chr4:7829400-7830800	Genic enhancers	Fetal Intestine Large	intestine
26	chr4:7829400-7830800	Enhancers	Left Ventricle	heart
27	chr4:7829400-7830800	Enhancers	Ovary	ovary
28	chr4:7829400-7831000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
29	chr4:7829400-7831400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr4:7829400-7831600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr4:7829400-7831600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr4:7829400-7832000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:7829400-7832200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr4:7829400-7832400	Genic enhancers	HSMM	muscle
35	chr4:7829400-7833400	Genic enhancers	Muscle Satellite Cultured Cells	--
36	chr4:7829400-7834200	Genic enhancers	NH-A	brain
37	chr4:7829600-7831000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:7829800-7830800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr4:7829800-7830800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr4:7829800-7830800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr4:7829800-7830800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr4:7829800-7830800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:7829800-7830800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr4:7829800-7830800	Genic enhancers	NHEK	skin
45	chr4:7829800-7831000	Strong transcription	Fetal Brain Female	brain
46	chr4:7829800-7831200	Enhancers	Right Atrium	heart
47	chr4:7829800-7832200	Enhancers	Primary T cells from cord blood	blood
48	chr4:7829800-7832400	Enhancers	Rectal Mucosa Donor 31	rectum
49	chr4:7829800-7832800	Enhancers	Fetal Heart	heart
50	chr4:7830000-7830800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links