Variant report

Variant	rs55851503
Chromosome Location	chr17:17401334-17401335
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17379236..17381999-chr17:17395224..17401626,6	MCF-7	breast:
2	chr17:17396995..17404908-chr17:17406815..17414609,13	MCF-7	breast:
3	chr17:17399866..17402763-chr17:17404179..17406127,2	MCF-7	breast:
4	chr17:17400013..17403525-chr17:17411408..17414122,3	MCF-7	breast:
5	chr17:17254341..17256825-chr17:17400091..17402826,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133027	Chromatin interaction
ENSG00000265511	Chromatin interaction
ENSG00000141026	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs55888211	0.90[AFR][1000 genomes]
rs56170742	0.96[AFR][1000 genomes]
rs58205065	0.96[AFR][1000 genomes]
rs58925282	0.96[AFR][1000 genomes]
rs59469334	0.96[AFR][1000 genomes]
rs73978927	0.90[AFR][1000 genomes]
rs73978928	0.96[AFR][1000 genomes]
rs73978932	0.96[AFR][1000 genomes]
rs73978937	0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482648	chr17:17315268-17455442	Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv907729	chr17:17338536-17425279	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv907730	chr17:17358004-17415217	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv907731	chr17:17358004-17504856	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	nsv907732	chr17:17381764-17415217	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv907733	chr17:17381764-17422608	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv907734	chr17:17381764-17425858	Enhancers Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	nsv907735	chr17:17381764-17448589	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
9	nsv907736	chr17:17381764-17465458	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv907737	chr17:17388167-17411030	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17399600-17413800	Weak transcription	Dnd41	blood
2	chr17:17400200-17401400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:17400200-17402400	Enhancers	Stomach Mucosa	stomach
4	chr17:17400600-17401400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr17:17400600-17401600	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:17400600-17401600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr17:17400600-17401600	Enhancers	Colonic Mucosa	Colon
8	chr17:17400600-17401600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr17:17400600-17402000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
10	chr17:17400600-17402000	Enhancers	Fetal Muscle Leg	muscle
11	chr17:17400600-17402600	Enhancers	Rectal Mucosa Donor 29	rectum
12	chr17:17400600-17402600	Enhancers	Rectal Mucosa Donor 31	rectum
13	chr17:17400600-17406800	Weak transcription	Brain Angular Gyrus	brain
14	chr17:17400600-17409800	Weak transcription	Esophagus	oesophagus
15	chr17:17400600-17410000	Weak transcription	Liver	Liver
16	chr17:17400600-17415200	Weak transcription	Ovary	ovary
17	chr17:17400600-17422000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr17:17400800-17401800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr17:17400800-17401800	Weak transcription	Fetal Intestine Large	intestine
20	chr17:17400800-17402600	Enhancers	Duodenum Mucosa	Duodenum
21	chr17:17400800-17406400	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr17:17400800-17407000	Weak transcription	Fetal Brain Female	brain
23	chr17:17400800-17409000	Weak transcription	Right Ventricle	heart
24	chr17:17400800-17413000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:17400800-17419200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr17:17401000-17406000	Weak transcription	Fetal Brain Male	brain
27	chr17:17401000-17406200	Weak transcription	Fetal Heart	heart
28	chr17:17401000-17406600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr17:17401000-17411200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr17:17401000-17418800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr17:17401000-17425400	Weak transcription	Thymus	Thymus
32	chr17:17401200-17401400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr17:17401200-17402200	Enhancers	Fetal Intestine Small	intestine
34	chr17:17401200-17411000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr17:17401200-17415200	Weak transcription	Gastric	stomach

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