Variant report

Variant	rs55854520
Chromosome Location	chr4:152925139-152925140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57718070	1.00[AFR][1000 genomes]
rs61539995	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv880341	chr4:152861685-153110256	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv931416	chr4:152877808-153440553	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152915200-152930200	Weak transcription	Right Atrium	heart
2	chr4:152919000-152925200	Weak transcription	Gastric	stomach
3	chr4:152919600-152930200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr4:152919800-152930200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr4:152920400-152925800	Weak transcription	Fetal Heart	heart
6	chr4:152920400-152928200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:152921400-152931600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:152921800-152927400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:152923800-152925800	Enhancers	Thymus	Thymus
10	chr4:152924000-152926200	Enhancers	Fetal Thymus	thymus
11	chr4:152924200-152925200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr4:152924400-152925200	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr4:152924800-152930200	Weak transcription	Primary T cells from cord blood	blood
14	chr4:152924800-152930200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr4:152924800-152930200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr4:152925000-152930200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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