Variant report

Variant	rs558546799
Chromosome Location	chr9:108219752-108219753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108219652..108221418-chr9:108230487..108232069,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv615115	chr9:108205262-108298183	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv893692	chr9:108218852-108320988	ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
5	nsv1050141	chr9:108219667-108317424	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108211000-108248000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:108211200-108219800	Weak transcription	Lung	lung
3	chr9:108211200-108220000	Weak transcription	Left Ventricle	heart
4	chr9:108211200-108220400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:108211200-108220400	Weak transcription	Primary B cells from cord blood	blood
6	chr9:108211200-108220600	Weak transcription	Ovary	ovary
7	chr9:108211400-108220000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:108211400-108220000	Weak transcription	Right Ventricle	heart
9	chr9:108211400-108222000	Weak transcription	Stomach Mucosa	stomach
10	chr9:108211600-108220000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr9:108211800-108219800	Weak transcription	Fetal Muscle Leg	muscle
12	chr9:108211800-108220000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr9:108211800-108227000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr9:108212200-108219800	Weak transcription	Brain Anterior Caudate	brain
15	chr9:108212200-108220000	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:108212200-108220000	Weak transcription	Fetal Intestine Small	intestine
17	chr9:108212200-108220400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr9:108212200-108220600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr9:108212200-108234800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:108212400-108219800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:108212600-108220000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr9:108212600-108220000	Weak transcription	NHEK	skin
23	chr9:108212800-108220200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:108212800-108220200	Weak transcription	Hela-S3	cervix
25	chr9:108212800-108226600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr9:108213600-108219800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:108214000-108220000	Weak transcription	A549	lung
28	chr9:108214200-108220400	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr9:108214400-108219800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:108214400-108220000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:108214400-108220000	Weak transcription	NHLF	lung
32	chr9:108214400-108221000	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:108214400-108227200	Weak transcription	Fetal Kidney	kidney
34	chr9:108214600-108220000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:108214600-108220000	Weak transcription	Fetal Stomach	stomach
36	chr9:108214600-108221000	Weak transcription	Small Intestine	intestine
37	chr9:108214600-108309800	Weak transcription	HUVEC	blood vessel
38	chr9:108217200-108220400	Weak transcription	HepG2	liver
39	chr9:108217800-108220000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:108217800-108220000	Weak transcription	Gastric	stomach
41	chr9:108218000-108220000	Weak transcription	Psoas Muscle	Psoas
42	chr9:108218200-108220200	Enhancers	Fetal Heart	heart
43	chr9:108218400-108219800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr9:108218400-108220000	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr9:108218800-108221200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr9:108218800-108221200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
47	chr9:108219000-108220000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr9:108219000-108220000	Weak transcription	NHDF-Ad	bronchial
49	chr9:108219000-108220600	Weak transcription	Aorta	Aorta
50	chr9:108219000-108221600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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