Variant report

Variant	rs55856138
Chromosome Location	chr14:25452368-25452369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55995630	0.90[AFR][1000 genomes]
rs56393711	0.89[AFR][1000 genomes]
rs58764839	0.81[AFR][1000 genomes]
rs59366121	0.85[AFR][1000 genomes]
rs74037427	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25424600-25460600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr14:25430000-25465800	Weak transcription	Lung	lung
3	chr14:25436600-25454200	Weak transcription	Fetal Muscle Leg	muscle
4	chr14:25436600-25454400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25436600-25455400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:25441000-25454200	Weak transcription	Fetal Brain Male	brain
7	chr14:25444200-25454600	Weak transcription	Right Atrium	heart
8	chr14:25445200-25454200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:25445600-25454600	Weak transcription	Brain Anterior Caudate	brain
10	chr14:25446800-25452800	Enhancers	HepG2	liver
11	chr14:25448000-25453000	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr14:25449200-25454200	Weak transcription	Fetal Heart	heart
13	chr14:25451000-25452600	Enhancers	Fetal Intestine Small	intestine
14	chr14:25451200-25452400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr14:25451200-25452400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:25451200-25452400	Enhancers	A549	lung
17	chr14:25451200-25452800	Enhancers	Hela-S3	cervix
18	chr14:25451400-25452400	Enhancers	Colonic Mucosa	Colon
19	chr14:25451400-25452400	Enhancers	Stomach Mucosa	stomach
20	chr14:25451400-25452600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr14:25451400-25452600	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:25451400-25452600	Enhancers	HSMM	muscle
23	chr14:25451400-25452800	Enhancers	Muscle Satellite Cultured Cells	--
24	chr14:25451400-25452800	Enhancers	Fetal Intestine Large	intestine
25	chr14:25451400-25452800	Enhancers	Fetal Lung	lung
26	chr14:25451600-25452400	Enhancers	NHLF	lung
27	chr14:25451600-25452600	Enhancers	Pancreatic Islets	Pancreatic Islet
28	chr14:25451800-25453200	Weak transcription	Small Intestine	intestine
29	chr14:25451800-25453600	Weak transcription	Duodenum Mucosa	Duodenum
30	chr14:25451800-25454400	Weak transcription	Left Ventricle	heart
31	chr14:25451800-25454400	Weak transcription	Pancreas	Pancrea
32	chr14:25451800-25454600	Weak transcription	Psoas Muscle	Psoas
33	chr14:25451800-25456800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr14:25451800-25470200	Weak transcription	HSMMtube	muscle
35	chr14:25452000-25453400	Weak transcription	K562	blood
36	chr14:25452000-25453600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:25452000-25454200	Weak transcription	Right Ventricle	heart
38	chr14:25452000-25454400	Weak transcription	Placenta	Placenta
39	chr14:25452200-25453000	Weak transcription	HUVEC	blood vessel
40	chr14:25452200-25453800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr14:25452200-25454000	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:25452200-25459000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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