Variant report

Variant	rs558573648
Chromosome Location	chr2:67267135-67267136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67264200-67267400	Enhancers	Fetal Intestine Small	intestine
2	chr2:67264600-67267400	Enhancers	Fetal Intestine Large	intestine
3	chr2:67264800-67268200	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:67265200-67267200	Enhancers	Pancreas	Pancrea
5	chr2:67265400-67268200	Enhancers	Liver	Liver
6	chr2:67266400-67268400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:67266600-67267400	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr2:67266600-67267600	Enhancers	Stomach Mucosa	stomach
9	chr2:67266600-67268600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr2:67266600-67269400	Enhancers	Hela-S3	cervix
11	chr2:67266800-67267200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr2:67266800-67267200	Enhancers	Fetal Stomach	stomach
13	chr2:67266800-67267400	Enhancers	Fetal Lung	lung
14	chr2:67266800-67268200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr2:67267000-67267400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr2:67267000-67267400	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr2:67267000-67267600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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