Variant report

Variant	rs558574361
Chromosome Location	chr10:116271193-116271194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037308	chr10:116141946-116519765	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv540780	chr10:116141946-116519765	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	esv3488893	chr10:116269312-116272560	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3311507	chr10:116269929-116271679	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3488890	chr10:116269962-116271679	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3488889	chr10:116269977-116271650	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3311518	chr10:116269979-116271653	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3488888	chr10:116269983-116271607	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3311542	chr10:116269999-116271642	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3488892	chr10:116270021-116271618	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3311531	chr10:116270050-116271575	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3488891	chr10:116270059-116271579	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3311553	chr10:116270066-116271572	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3488894	chr10:116270066-116271572	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv11294	chr10:116270120-116271533	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116225600-116278800	Weak transcription	HSMM	muscle
2	chr10:116243000-116286200	Weak transcription	Spleen	Spleen
3	chr10:116258000-116271400	Enhancers	Stomach Mucosa	stomach
4	chr10:116259600-116272000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:116259800-116276800	Weak transcription	Thymus	Thymus
6	chr10:116260000-116272800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:116260400-116272800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr10:116261200-116279400	Weak transcription	GM12878-XiMat	blood
9	chr10:116262600-116274800	Weak transcription	Fetal Thymus	thymus
10	chr10:116264000-116271600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr10:116265000-116271800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr10:116265400-116271600	Weak transcription	Psoas Muscle	Psoas
13	chr10:116265400-116279400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:116265600-116274800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr10:116265600-116275200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr10:116266000-116275000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:116266000-116276600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:116267600-116274800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr10:116267600-116275000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:116267600-116278800	Weak transcription	Colonic Mucosa	Colon
21	chr10:116267600-116279200	Weak transcription	Aorta	Aorta
22	chr10:116267800-116271400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr10:116267800-116271600	Weak transcription	HMEC	breast
24	chr10:116267800-116271600	Weak transcription	NHEK	skin
25	chr10:116267800-116273200	Weak transcription	Pancreas	Pancrea
26	chr10:116267800-116274800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:116267800-116278400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:116268000-116271600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:116268000-116272800	Weak transcription	Fetal Kidney	kidney
30	chr10:116268000-116273000	Weak transcription	Pancreatic Islets	Pancreatic Islet
31	chr10:116268000-116273400	Weak transcription	Liver	Liver
32	chr10:116268000-116277600	Weak transcription	A549	lung
33	chr10:116268000-116278800	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:116268200-116272600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:116268200-116276200	Weak transcription	Brain Substantia Nigra	brain
36	chr10:116268200-116276600	Weak transcription	Fetal Stomach	stomach
37	chr10:116268200-116278800	Weak transcription	Fetal Intestine Large	intestine
38	chr10:116268200-116281600	Weak transcription	Brain Anterior Caudate	brain
39	chr10:116268400-116271600	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:116268400-116271800	Weak transcription	HUVEC	blood vessel
41	chr10:116268400-116272200	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr10:116268400-116276800	Weak transcription	Fetal Intestine Small	intestine
43	chr10:116268400-116277000	Weak transcription	Fetal Muscle Trunk	muscle
44	chr10:116268600-116272800	Weak transcription	Fetal Lung	lung
45	chr10:116268600-116273200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:116268600-116277000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:116268800-116273200	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr10:116269000-116271800	Weak transcription	Hela-S3	cervix
49	chr10:116269000-116273400	Weak transcription	Fetal Heart	heart
50	chr10:116269000-116275000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links