Variant report

Variant	rs558579724
Chromosome Location	chr6:24977142-24977143
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:24976124..24977155-chr7:44835947..44837437,19	Hela-S3	cervix:
2	chr6:24976141..24977148-chr7:44835918..44836756,6	NB4	blood:

Variant related genes	Relation type
ENSG00000196262	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022966	chr6:24763776-25154212	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv538160	chr6:24763776-25154212	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv1019504	chr6:24869174-24994758	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv883482	chr6:24926730-25035920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv1023989	chr6:24930362-25285679	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv1030634	chr6:24938277-25040161	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv830610	chr6:24951741-25124239	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
8	nsv969353	chr6:24976770-24978040	Weak transcription Enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24950400-24988600	Weak transcription	Dnd41	blood
2	chr6:24954400-24980800	Weak transcription	Thymus	Thymus
3	chr6:24969200-24980800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:24969400-24980600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:24973400-24979200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:24975000-24978800	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr6:24975000-24979000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:24975000-24979200	Weak transcription	HSMM	muscle
9	chr6:24975000-24979400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:24975200-24979200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr6:24975400-24980600	Weak transcription	Primary T cells from cord blood	blood
12	chr6:24975400-24980800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr6:24975800-24978600	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:24975800-24979200	Weak transcription	Primary B cells from cord blood	blood
15	chr6:24975800-24980800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr6:24976000-24977400	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr6:24976000-24977800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:24976000-24978800	Weak transcription	Primary B cells from peripheral blood	blood
19	chr6:24976000-24979000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr6:24976000-24979000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr6:24976000-24979200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr6:24976000-24979400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr6:24976000-24979800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:24976000-24980800	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr6:24976000-24980800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr6:24976400-24979200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr6:24976400-24979200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr6:24976600-24981600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:24977000-24977800	Weak transcription	HUES6 Cell Line	embryonic stem cell

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