Variant report

Variant	rs558585661
Chromosome Location	chr7:136686496-136686497
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029192	chr7:136433278-137147566	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv831147	chr7:136583444-136755741	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	esv2753059	chr7:136633745-136893745	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv527148	chr7:136685871-136687403	Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:136674800-136694200	Weak transcription	Left Ventricle	heart
2	chr7:136684800-136689000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr7:136685200-136686600	Enhancers	Fetal Heart	heart
4	chr7:136685400-136686600	Enhancers	Colon Smooth Muscle	Colon
5	chr7:136685400-136686800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:136685400-136688200	Enhancers	Rectal Smooth Muscle	rectum
7	chr7:136685600-136686600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:136685600-136688200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr7:136685800-136686600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:136685800-136686600	Enhancers	Fetal Stomach	stomach
11	chr7:136685800-136686600	Enhancers	NH-A	brain
12	chr7:136685800-136686600	Enhancers	Osteobl	bone
13	chr7:136685800-136686800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr7:136685800-136686800	Enhancers	NHLF	lung
15	chr7:136686000-136686600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr7:136686000-136686600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr7:136686000-136686600	Enhancers	Fetal Kidney	kidney
18	chr7:136686000-136686800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr7:136686200-136686600	Enhancers	H1 Cell Line	embryonic stem cell
20	chr7:136686200-136686600	Enhancers	Gastric	stomach
21	chr7:136686200-136689200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr7:136686200-136690600	Weak transcription	Right Ventricle	heart
23	chr7:136686200-136691000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr7:136686200-136692200	Weak transcription	Ovary	ovary
25	chr7:136686400-136687600	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr7:136686400-136688000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr7:136686400-136692000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links