Variant report

Variant	rs558589127
Chromosome Location	chr4:121843035-121843036
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:121836736..121838271-chr4:121841875..121843483,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998094	chr4:121504565-122374203	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1009395	chr4:121841442-122557363	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv537235	chr4:121841442-122557363	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	esv3405799	chr4:121842552-121845050	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:121841800-121844600	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:121842400-121843200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr4:121842400-121843200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:121842400-121844400	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr4:121842400-121844400	Active TSS	A549	lung
6	chr4:121842400-121844600	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr4:121842400-121844600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:121842400-121844800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:121842600-121843200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr4:121842600-121843200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
11	chr4:121842600-121843200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
12	chr4:121842600-121843200	Flanking Active TSS	HUVEC	blood vessel
13	chr4:121842600-121843200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
14	chr4:121842600-121843200	Flanking Active TSS	Osteobl	bone
15	chr4:121842600-121843400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr4:121842600-121844200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:121842600-121844400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr4:121842600-121844400	Active TSS	Brain Cingulate Gyrus	brain
19	chr4:121842600-121844400	Active TSS	Rectal Smooth Muscle	rectum
20	chr4:121842600-121844400	Active TSS	Hela-S3	cervix
21	chr4:121842600-121844600	Active TSS	H1 Cell Line	embryonic stem cell
22	chr4:121842600-121844600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr4:121842600-121844600	Active TSS	H9 Cell Line	embryonic stem cell
24	chr4:121842600-121844600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr4:121842600-121844600	Active TSS	Brain Angular Gyrus	brain
26	chr4:121842600-121844600	Active TSS	Brain Anterior Caudate	brain
27	chr4:121842600-121844600	Active TSS	Brain Inferior Temporal Lobe	brain
28	chr4:121842600-121844600	Active TSS	Brain Substantia Nigra	brain
29	chr4:121842600-121844600	Active TSS	Fetal Muscle Trunk	muscle
30	chr4:121842600-121844600	Active TSS	Left Ventricle	heart
31	chr4:121842600-121844600	Active TSS	Ovary	ovary
32	chr4:121842600-121844600	Active TSS	Right Atrium	heart
33	chr4:121842600-121844600	Active TSS	NHDF-Ad	bronchial
34	chr4:121842600-121844800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:121842800-121843200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr4:121842800-121843200	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr4:121842800-121843200	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
38	chr4:121842800-121843200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
39	chr4:121842800-121843200	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
40	chr4:121842800-121843200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
41	chr4:121842800-121843200	Active TSS	Esophagus	oesophagus
42	chr4:121842800-121843400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
43	chr4:121842800-121843400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
44	chr4:121842800-121843400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:121842800-121843400	Active TSS	Fetal Heart	heart
46	chr4:121842800-121843600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:121842800-121843600	Active TSS	Brain Germinal Matrix	brain
48	chr4:121842800-121843800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:121842800-121844200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr4:121842800-121844200	Flanking Active TSS	Primary hematopoietic stem cells	blood

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