Variant report

Variant	rs558602759
Chromosome Location	chr6:149456627-149456628
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv1034080	chr6:149456387-149480990	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149450000-149457000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:149450000-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149450200-149461200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:149452000-149458000	Weak transcription	Pancreas	Pancrea
5	chr6:149454000-149457200	Enhancers	Primary hematopoietic stem cells	blood
6	chr6:149454000-149459200	Weak transcription	Esophagus	oesophagus
7	chr6:149454200-149458800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr6:149454200-149459200	Weak transcription	Dnd41	blood
9	chr6:149454200-149459400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr6:149454800-149456800	Enhancers	Fetal Lung	lung
11	chr6:149455400-149457400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:149455800-149459000	Weak transcription	K562	blood
13	chr6:149456000-149457600	Enhancers	GM12878-XiMat	blood
14	chr6:149456200-149457000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr6:149456200-149458800	Weak transcription	Adipose Nuclei	Adipose
16	chr6:149456400-149457000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:149456400-149457800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:149456400-149459000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:149456600-149457200	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr6:149456600-149457400	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr6:149456600-149457400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr6:149456600-149459400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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