Variant report

Variant	rs558606633
Chromosome Location	chr7:69340519-69340520
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1017390	chr7:69339404-69406232	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv538920	chr7:69339404-69406232	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69311400-69371600	Weak transcription	Primary B cells from cord blood	blood
2	chr7:69337400-69345000	Weak transcription	Fetal Brain Female	brain
3	chr7:69337400-69345200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:69337600-69343200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr7:69337600-69345600	Weak transcription	Colon Smooth Muscle	Colon
6	chr7:69337600-69354600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr7:69337800-69345000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr7:69338400-69344600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr7:69338400-69344600	Weak transcription	GM12878-XiMat	blood
10	chr7:69338400-69350600	Weak transcription	Brain Anterior Caudate	brain
11	chr7:69338400-69367200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:69338600-69342400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr7:69338600-69345000	Weak transcription	Thymus	Thymus
14	chr7:69338800-69341800	Weak transcription	Primary B cells from peripheral blood	blood
15	chr7:69339200-69342400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr7:69339200-69343400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:69339200-69344600	Weak transcription	Fetal Thymus	thymus
18	chr7:69339400-69344400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr7:69339800-69343000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr7:69340000-69342800	Weak transcription	Ovary	ovary

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