Variant report

Variant	rs558621175
Chromosome Location	chr10:99300146-99300147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99255227..99260148-chr10:99300104..99304804,10	MCF-7	breast:
2	chr10:99293705..99296189-chr10:99297526..99301633,5	MCF-7	breast:
3	chr10:99204676..99206616-chr10:99299174..99301378,2	MCF-7	breast:
4	chr10:99298484..99301202-chr10:99302783..99304402,2	MCF-7	breast:
5	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
6	chr10:99298137..99300363-chr10:99331501..99333055,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171311	Chromatin interaction
ENSG00000165887	Chromatin interaction
ENSG00000171307	Chromatin interaction
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99277800-99301800	Weak transcription	Gastric	stomach
2	chr10:99278000-99302600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr10:99278400-99301800	Weak transcription	Spleen	Spleen
4	chr10:99278600-99300200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr10:99281400-99302200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:99282200-99301800	Weak transcription	Pancreas	Pancrea
7	chr10:99293200-99301800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:99293400-99300400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr10:99294400-99301800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:99295400-99302400	Weak transcription	Fetal Intestine Small	intestine
11	chr10:99297000-99300400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:99297200-99303600	Enhancers	Placenta	Placenta
13	chr10:99297400-99300800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:99297400-99302200	Enhancers	HSMMtube	muscle
15	chr10:99297800-99300800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:99297800-99301600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:99297800-99301800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:99297800-99301800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:99297800-99301800	Enhancers	Osteobl	bone
20	chr10:99297800-99302800	Enhancers	NH-A	brain
21	chr10:99298200-99300400	Enhancers	NHEK	skin
22	chr10:99298200-99301200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:99298200-99301800	Enhancers	A549	lung
24	chr10:99298200-99301800	Enhancers	HSMM	muscle
25	chr10:99298200-99301800	Enhancers	NHDF-Ad	bronchial
26	chr10:99298200-99301800	Enhancers	NHLF	lung
27	chr10:99298200-99302400	Enhancers	HMEC	breast
28	chr10:99298200-99302600	Enhancers	Adipose Nuclei	Adipose
29	chr10:99298200-99302800	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr10:99298200-99302800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr10:99298200-99302800	Enhancers	HUVEC	blood vessel
32	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
35	chr10:99298400-99300800	Enhancers	Brain Cingulate Gyrus	brain
36	chr10:99298400-99302800	Enhancers	Brain Angular Gyrus	brain
37	chr10:99298400-99303600	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr10:99298400-99304000	Enhancers	Placenta Amnion	Placenta Amnion
39	chr10:99298400-99304400	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr10:99298600-99300800	Enhancers	HUES6 Cell Line	embryonic stem cell
41	chr10:99298600-99300800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr10:99298600-99300800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr10:99298600-99300800	Enhancers	Right Atrium	heart
44	chr10:99298600-99301200	Enhancers	Lung	lung
45	chr10:99298600-99303800	Enhancers	Fetal Muscle Trunk	muscle
46	chr10:99298600-99304000	Enhancers	Fetal Muscle Leg	muscle
47	chr10:99298800-99300200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
48	chr10:99298800-99300200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr10:99298800-99300600	Enhancers	Aorta	Aorta
50	chr10:99298800-99301200	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links