Variant report

Variant	rs558627086
Chromosome Location	chr17:45223325-45223326
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:45215729..45220383-chr17:45221997..45225323,4	MCF-7	breast:
2	chr17:45201078..45204476-chr17:45221979..45225273,3	K562	blood:
3	chr17:45221635..45223977-chr17:45273349..45275137,2	K562	blood:

Variant related genes	Relation type
ENSG00000004897	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv833467	chr17:45063935-45252624	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv2760450	chr17:45130777-45225222	Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv908563	chr17:45158537-45230311	ZNF genes & repeats Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	esv1796833	chr17:45212898-45244822	Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv3365602	chr17:45214397-45234526	ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv960498	chr17:45218734-45237019	Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv3391514	chr17:45219677-45229261	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv8272	chr17:45219757-45232073	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	esv3323498	chr17:45221212-45229280	Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	esv3325465	chr17:45221246-45229257	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	esv3402949	chr17:45221263-45232118	ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv3334172	chr17:45221292-45232146	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
14	esv4896	chr17:45223249-45233036	Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45194800-45234200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr17:45214600-45229200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:45214800-45234200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr17:45214800-45234200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr17:45215200-45229400	Strong transcription	Brain Germinal Matrix	brain
6	chr17:45216400-45228800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr17:45216400-45232600	Strong transcription	Osteobl	bone
8	chr17:45219000-45225200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr17:45219400-45233400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr17:45220000-45232800	Strong transcription	A549	lung
11	chr17:45221400-45223400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr17:45221400-45223400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr17:45221400-45223600	Weak transcription	Hela-S3	cervix
14	chr17:45221400-45224200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr17:45221400-45224400	Strong transcription	Primary B cells from cord blood	blood
16	chr17:45221400-45225000	Weak transcription	Right Atrium	heart
17	chr17:45221400-45225400	Weak transcription	Psoas Muscle	Psoas
18	chr17:45221400-45225600	Weak transcription	Brain Hippocampus Middle	brain
19	chr17:45221400-45225800	Weak transcription	NHEK	skin
20	chr17:45221400-45227400	Weak transcription	Brain Substantia Nigra	brain
21	chr17:45221400-45227600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr17:45221400-45227600	Weak transcription	Brain Anterior Caudate	brain
23	chr17:45221400-45227800	Weak transcription	Brain Angular Gyrus	brain
24	chr17:45221400-45228000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr17:45221400-45228200	Weak transcription	Gastric	stomach
26	chr17:45221400-45228600	Weak transcription	Fetal Kidney	kidney
27	chr17:45221400-45229000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:45221400-45229000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr17:45221400-45230400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr17:45221400-45230400	Weak transcription	Spleen	Spleen
31	chr17:45221400-45231800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr17:45221400-45231800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr17:45221400-45231800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr17:45221400-45232600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr17:45221400-45232800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr17:45221400-45232800	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr17:45221400-45233000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr17:45221400-45233000	Strong transcription	NH-A	brain
39	chr17:45221400-45233200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr17:45221400-45233200	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr17:45221400-45233400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr17:45221400-45233400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr17:45221400-45233400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr17:45221400-45233400	Strong transcription	Liver	Liver
45	chr17:45221400-45233400	Strong transcription	Fetal Thymus	thymus
46	chr17:45221400-45233600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr17:45221400-45233600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr17:45221400-45234200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr17:45221400-45234200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr17:45221400-45234200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links