Variant report

Variant	rs558642540
Chromosome Location	chr8:125864215-125864216
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125642013..125645236-chr8:125863862..125867426,3	MCF-7	breast:
2	chr8:125550448..125552591-chr8:125862692..125864257,2	MCF-7	breast:
3	chr8:125863185..125866167-chr8:125900364..125902687,2	K562	blood:
4	chr8:125861710..125864506-chr8:125866256..125868160,3	K562	blood:
5	chr8:125736316..125742243-chr8:125861977..125870763,24	MCF-7	breast:
6	chr8:125601699..125603557-chr8:125863717..125866161,2	MCF-7	breast:
7	chr8:125861710..125864506-chr8:125866256..125867953,3	K562	blood:
8	chr8:125849543..125852163-chr8:125864125..125866129,2	MCF-7	breast:
9	chr8:125734815..125743876-chr8:125864194..125871100,21	MCF-7	breast:
10	chr8:125851298..125853830-chr8:125862569..125864534,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	esv3378411	chr8:125863031-125864267	Weak transcription Enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125860400-125866000	Weak transcription	Esophagus	oesophagus
2	chr8:125861000-125865400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:125861000-125865600	Weak transcription	Right Ventricle	heart
4	chr8:125861400-125866000	Weak transcription	Pancreas	Pancrea
5	chr8:125861400-125869000	Weak transcription	Ovary	ovary
6	chr8:125862000-125865600	Weak transcription	Fetal Heart	heart
7	chr8:125862200-125866000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:125862200-125867200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:125862200-125868000	Weak transcription	HMEC	breast
10	chr8:125863000-125868600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:125863200-125864400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:125863400-125864400	Enhancers	K562	blood
13	chr8:125863800-125868600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr8:125863800-125869000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr8:125864000-125865200	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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