Variant report

Variant	rs558643866
Chromosome Location	chr3:135222843-135222844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:134319632..134320209-chr3:135222435..135223348,2	K562	blood:
2	chr3:135130991..135131960-chr3:135222470..135223123,2	MCF-7	breast:
3	chr3:134880013..134880813-chr3:135222472..135223108,2	MCF-7	breast:
4	chr3:134319400..134320351-chr3:135222419..135223319,2	MCF-7	breast:
5	chr3:135222795..135223348-chr3:135614058..135614678,2	MCF-7	breast:
6	chr3:134513381..134514586-chr3:135222393..135223990,13	MCF-7	breast:
7	chr3:134857366..134857914-chr3:135222828..135223498,2	MCF-7	breast:
8	chr3:134513166..134514322-chr3:135222261..135223395,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000154928	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460860	chr3:135107678-135769006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv591829	chr3:135107678-135769006	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv527433	chr3:135221504-135225249	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518089	chr3:135221504-135232994	Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:135221400-135223400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr3:135221800-135223000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:135222000-135223000	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr3:135222200-135223200	Active TSS	Brain Cingulate Gyrus	brain
5	chr3:135222400-135223000	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr3:135222400-135223000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr3:135222400-135223400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:135222600-135223000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:135222600-135223000	Bivalent Enhancer	Liver	Liver
10	chr3:135222600-135223000	Enhancers	Colon Smooth Muscle	Colon
11	chr3:135222600-135223000	Enhancers	Right Atrium	heart
12	chr3:135222600-135223000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:135222600-135223000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr3:135222600-135223200	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr3:135222600-135223200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:135222600-135223200	Bivalent Enhancer	Fetal Lung	lung
17	chr3:135222600-135223400	Enhancers	Pancreas	Pancrea
18	chr3:135222600-135223400	Enhancers	Spleen	Spleen
19	chr3:135222800-135223000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:135222800-135223000	Enhancers	Brain Hippocampus Middle	brain
21	chr3:135222800-135223000	Enhancers	Fetal Brain Female	brain
22	chr3:135222800-135223200	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr3:135222800-135223200	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr3:135222800-135223200	Active TSS	iPS-15b Cell Line	embryonic stem cell
25	chr3:135222800-135223200	Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr3:135222800-135223400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr3:135222800-135223400	Enhancers	Fetal Brain Male	brain
28	chr3:135222800-135224200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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