Variant report

Variant	rs55866026
Chromosome Location	chr2:212796378-212796379
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10172967	0.83[ASN][1000 genomes]
rs10180494	0.97[ASN][1000 genomes]
rs10210841	0.89[ASN][1000 genomes]
rs13027169	0.90[ASN][1000 genomes]
rs2118892	0.92[ASN][1000 genomes]
rs2165098	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs62184548	0.90[ASN][1000 genomes]
rs7578784	0.89[ASN][1000 genomes]
rs7598440	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34128	chr2:212581485-212857122	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv834525	chr2:212693190-212860356	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:212791600-212800200	Weak transcription	Aorta	Aorta
2	chr2:212792200-212796600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr2:212792200-212796800	Enhancers	Dnd41	blood
4	chr2:212792600-212796400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:212794600-212796600	Enhancers	Primary hematopoietic stem cells	blood
6	chr2:212795000-212796400	Enhancers	Fetal Heart	heart
7	chr2:212795000-212796400	Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr2:212795200-212796400	Enhancers	HMEC	breast
9	chr2:212795200-212796800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:212795200-212796800	Enhancers	NHEK	skin
11	chr2:212795800-212796600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr2:212796000-212796600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr2:212796200-212796400	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:212796200-212796600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr2:212796200-212800000	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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