Variant report

Variant	rs558665568
Chromosome Location	chr5:177607560-177607561
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:177606946..177609257-chr5:177631004..177633019,2	MCF-7	breast:
2	chr5:177605439..177607840-chr5:177629725..177632123,2	K562	blood:

Variant related genes	Relation type
ENSG00000197451	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
2	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
3	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
4	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
5	nsv883190	chr5:177532201-177620189	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
6	nsv600394	chr5:177549491-177608195	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
7	nsv1017664	chr5:177578194-177633116	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	93 gene(s)	inside rSNPs	diseases
8	nsv482872	chr5:177580298-177744381	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	106 gene(s)	inside rSNPs	diseases
9	nsv883193	chr5:177591495-177620189	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv883194	chr5:177604268-177620189	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv523636	chr5:177606419-177608195	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177605200-177609000	Weak transcription	Fetal Thymus	thymus
2	chr5:177605400-177608400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr5:177605400-177608800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:177605400-177609400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:177606600-177607600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr5:177606600-177607800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr5:177606600-177610800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:177606800-177607600	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr5:177606800-177609000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:177607000-177607800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr5:177607000-177608000	Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr5:177607200-177607800	Active TSS	H9 Cell Line	embryonic stem cell
13	chr5:177607200-177609400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:177607400-177607600	Flanking Active TSS	H1 Cell Line	embryonic stem cell
15	chr5:177607400-177607600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr5:177607400-177607600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
17	chr5:177607400-177607600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
18	chr5:177607400-177607800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
19	chr5:177607400-177608400	Enhancers	K562	blood
20	chr5:177607400-177610600	Enhancers	Primary hematopoietic stem cells	blood

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