Variant report

Variant	rs558674631
Chromosome Location	chr10:23016626-23016627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv550210	chr10:23012096-23064702	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3520789	chr10:23014898-23019504	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3480396	chr10:23015429-23016862	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3496567	chr10:23015459-23016864	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3496570	chr10:23015466-23016836	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3496568	chr10:23015479-23016791	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3480174	chr10:23015484-23016830	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3480285	chr10:23015486-23016823	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3480618	chr10:23015493-23016782	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3496566	chr10:23015503-23016804	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3496569	chr10:23015509-23016803	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3480507	chr10:23015548-23016759	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3496565	chr10:23015558-23016759	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3480729	chr10:23015562-23016757	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3496571	chr10:23015562-23016757	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3520790	chr10:23015562-23016757	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv15894	chr10:23015569-23016682	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23004400-23017800	Weak transcription	Spleen	Spleen
2	chr10:23014000-23017200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:23015800-23017000	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:23016000-23016800	Enhancers	GM12878-XiMat	blood
5	chr10:23016200-23016800	Enhancers	Brain Cingulate Gyrus	brain
6	chr10:23016400-23016800	Enhancers	Brain Anterior Caudate	brain
7	chr10:23016400-23016800	Enhancers	Brain Inferior Temporal Lobe	brain
8	chr10:23016400-23027600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:23016600-23016800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:23016600-23017000	Enhancers	Brain Angular Gyrus	brain
11	chr10:23016600-23018000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links