Variant report

Variant	rs558686777
Chromosome Location	chr22:29469482-29469483
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:29279568..29281765-chr22:29467462..29470387,2	K562	blood:

Variant related genes	Relation type
ENSG00000183579	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531586	chr22:29252132-29902266	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv524259	chr22:29467221-29482221	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3350194	chr22:29468252-29470350	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:29467000-29470400	Enhancers	Fetal Heart	heart
2	chr22:29467200-29470200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr22:29467200-29470400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr22:29467200-29470400	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr22:29467200-29470600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr22:29467200-29471200	Active TSS	Ovary	ovary
7	chr22:29467400-29469600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:29467400-29469600	Active TSS	Right Ventricle	heart
9	chr22:29467400-29470000	Active TSS	Aorta	Aorta
10	chr22:29467400-29470200	Active TSS	Psoas Muscle	Psoas
11	chr22:29467400-29470200	Active TSS	Right Atrium	heart
12	chr22:29467600-29470400	Active TSS	HSMM	muscle
13	chr22:29467800-29470200	Active TSS	Brain Substantia Nigra	brain
14	chr22:29467800-29470400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr22:29468000-29470600	Flanking Active TSS	Colonic Mucosa	Colon
16	chr22:29468400-29469800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr22:29468400-29469800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr22:29468400-29470000	Active TSS	HSMMtube	muscle
19	chr22:29468600-29469800	Active TSS	A549	lung
20	chr22:29468600-29470200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
21	chr22:29468600-29470200	Active TSS	Brain Angular Gyrus	brain
22	chr22:29468600-29470200	Active TSS	Brain Anterior Caudate	brain
23	chr22:29468600-29470200	Active TSS	Left Ventricle	heart
24	chr22:29468600-29470600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr22:29468600-29470600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
26	chr22:29468600-29471400	Active TSS	Fetal Kidney	kidney
27	chr22:29468800-29469600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr22:29468800-29469600	Active TSS	Hela-S3	cervix
29	chr22:29468800-29469800	Active TSS	Brain Hippocampus Middle	brain
30	chr22:29468800-29469800	Active TSS	Duodenum Mucosa	Duodenum
31	chr22:29468800-29469800	Active TSS	Fetal Lung	lung
32	chr22:29468800-29469800	Active TSS	Thymus	Thymus
33	chr22:29468800-29469800	Active TSS	K562	blood
34	chr22:29468800-29470000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr22:29468800-29470000	Active TSS	Breast Myoepithelial Primary Cells	Breast
36	chr22:29468800-29470000	Active TSS	Primary neutrophils fromperipheralblood	blood
37	chr22:29468800-29470000	Active TSS	Pancreas	Pancrea
38	chr22:29468800-29470000	Active TSS	Skeletal Muscle Female	skeletal muscle
39	chr22:29468800-29470000	Active TSS	HepG2	liver
40	chr22:29468800-29470200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
41	chr22:29468800-29470200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr22:29468800-29470200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
43	chr22:29468800-29470200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
44	chr22:29468800-29470200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr22:29468800-29470200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr22:29468800-29470200	Active TSS	Colon Smooth Muscle	Colon
47	chr22:29468800-29470200	Active TSS	Esophagus	oesophagus
48	chr22:29468800-29470200	Active TSS	Fetal Intestine Large	intestine
49	chr22:29468800-29470200	Active TSS	Fetal Intestine Small	intestine
50	chr22:29468800-29470200	Bivalent/Poised TSS	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links