Variant report

Variant	rs558692010
Chromosome Location	chr11:26927338-26927339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv897146	chr11:26913936-27019331	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv983219	chr11:26926565-26932064	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26925200-26927400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:26925200-26928000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:26925400-26927400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:26925600-26927400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:26926400-26931600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr11:26926800-26927400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:26926800-26927400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:26926800-26927400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:26926800-26927400	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:26927000-26927400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:26927000-26927400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:26927000-26927400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:26927000-26927400	Enhancers	Fetal Muscle Leg	muscle
15	chr11:26927000-26927400	Enhancers	NHDF-Ad	bronchial
16	chr11:26927000-26927400	Enhancers	NHEK	skin
17	chr11:26927000-26931800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:26927200-26927400	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:26927200-26927400	Enhancers	Esophagus	oesophagus
20	chr11:26927200-26930200	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:26927200-26931800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:26927200-26932200	Weak transcription	Fetal Lung	lung
23	chr11:26927200-26936200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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