Variant report

Variant	rs55870349
Chromosome Location	chr5:68137194-68137195
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs56263508	0.88[AFR][1000 genomes]
rs58388027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59075558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59344077	0.80[AFR][1000 genomes]
rs61034730	0.88[AFR][1000 genomes]
rs6897206	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73121050	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv328643	chr5:68134744-68139215	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68133000-68142800	Weak transcription	Aorta	Aorta
2	chr5:68135200-68139200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:68135400-68139400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:68135400-68143400	Weak transcription	HMEC	breast
5	chr5:68135400-68143600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:68135600-68140000	Weak transcription	NHDF-Ad	bronchial
7	chr5:68136800-68143400	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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