Variant report

Variant	rs55870426
Chromosome Location	chr17:60164008-60164009
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:60161818..60164502-chr17:60171799..60173649,2	MCF-7	breast:
2	chr17:60163163..60166092-chr17:60169784..60172522,2	MCF-7	breast:
3	chr17:60150142..60152552-chr17:60161661..60164085,2	MCF-7	breast:
4	chr17:60005240..60007061-chr17:60161631..60164452,2	MCF-7	breast:
5	chr17:60141696..60143568-chr17:60162916..60166435,4	MCF-7	breast:
6	chr17:60162660..60165107-chr17:60181643..60183994,2	K562	blood:
7	chr17:60140089..60144135-chr17:60163778..60167736,3	K562	blood:
8	chr17:60163070..60164734-chr17:60167356..60169159,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17627060	1.00[AFR][1000 genomes]
rs34259829	1.00[AFR][1000 genomes]
rs71375812	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062816	chr17:60074670-60470465	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	esv2753884	chr17:60077852-60190630	Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv2755037	chr17:60086508-60386211	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3415630	chr17:60124819-60401635	Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:60155800-60167600	Weak transcription	Pancreas	Pancrea
2	chr17:60161000-60164400	Enhancers	Liver	Liver
3	chr17:60162000-60167400	Enhancers	HepG2	liver
4	chr17:60163200-60164800	Enhancers	Osteobl	bone
5	chr17:60163600-60166800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr17:60163600-60167000	Weak transcription	Fetal Intestine Small	intestine
7	chr17:60163600-60169200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:60163800-60166400	Weak transcription	Stomach Mucosa	stomach
9	chr17:60164000-60164200	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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