Variant report

Variant	rs558708178
Chromosome Location	chr11:77689978-77689979
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:77684778..77687771-chr11:77687903..77690145,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050891	chr11:77416645-77788002	Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv1037292	chr11:77431583-77745934	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv541092	chr11:77431583-77745934	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv949316	chr11:77454076-77769885	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv520740	chr11:77553638-77997936	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv1035753	chr11:77577384-77866386	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv541093	chr11:77577384-77866386	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv8841	chr11:77641044-77692578	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv526268	chr11:77688774-77698524	Strong transcription Weak transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77583400-77690000	Weak transcription	Colonic Mucosa	Colon
2	chr11:77592800-77690000	Weak transcription	Small Intestine	intestine
3	chr11:77597800-77690000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:77597800-77690000	Weak transcription	Esophagus	oesophagus
5	chr11:77597800-77690000	Weak transcription	Gastric	stomach
6	chr11:77602800-77690000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr11:77614800-77700200	Weak transcription	Psoas Muscle	Psoas
8	chr11:77625800-77697400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:77626000-77690000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr11:77626600-77690000	Weak transcription	Pancreas	Pancrea
11	chr11:77645000-77690000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:77648600-77690000	Weak transcription	Brain Germinal Matrix	brain
13	chr11:77649200-77701200	Weak transcription	NH-A	brain
14	chr11:77661400-77704400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:77664200-77704000	Weak transcription	NHEK	skin
16	chr11:77665800-77704200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:77666000-77704400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr11:77667600-77704200	Weak transcription	NHLF	lung
19	chr11:77668400-77701200	Weak transcription	Aorta	Aorta
20	chr11:77668600-77690000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr11:77668600-77690000	Weak transcription	Lung	lung
22	chr11:77670000-77690000	Weak transcription	Spleen	Spleen
23	chr11:77671200-77704200	Weak transcription	NHDF-Ad	bronchial
24	chr11:77672000-77690400	Weak transcription	Hela-S3	cervix
25	chr11:77672000-77701200	Weak transcription	Brain Cingulate Gyrus	brain
26	chr11:77672000-77703800	Weak transcription	Fetal Brain Male	brain
27	chr11:77672200-77690000	Weak transcription	Ovary	ovary
28	chr11:77672200-77690000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr11:77679000-77704200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:77680800-77690200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:77680800-77693400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr11:77680800-77700200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr11:77681000-77704200	Weak transcription	HSMMtube	muscle
34	chr11:77681400-77690000	Weak transcription	Fetal Muscle Leg	muscle
35	chr11:77682000-77700200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:77682600-77690000	Weak transcription	Thymus	Thymus
37	chr11:77682800-77700800	Weak transcription	Right Ventricle	heart
38	chr11:77684200-77702400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr11:77685000-77690000	Weak transcription	Fetal Lung	lung
40	chr11:77685800-77690000	Weak transcription	Fetal Stomach	stomach
41	chr11:77688200-77694200	Strong transcription	HUES64 Cell Line	embryonic stem cell
42	chr11:77688200-77694600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr11:77688200-77704800	Weak transcription	Stomach Mucosa	stomach
44	chr11:77688400-77692800	Strong transcription	Primary T helper cells PMA-I stimulated	--
45	chr11:77688400-77694800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:77688400-77702200	Strong transcription	Dnd41	blood
47	chr11:77688600-77702800	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr11:77688800-77691800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr11:77688800-77692200	Strong transcription	Placenta	Placenta
50	chr11:77688800-77692200	Strong transcription	Left Ventricle	heart

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