The 2.0 version of rSNPBase

Variant report

Variant rs558727019
Chromosome Location chr3:99546510-99546511
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:99537200-99562600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr3:99537200-99594400 Weak transcription Esophagus oesophagus
3 chr3:99537400-99551000 Weak transcription Fetal Muscle Trunk muscle
4 chr3:99537400-99552400 Weak transcription Ovary ovary
5 chr3:99537800-99547600 Weak transcription Aorta Aorta
6 chr3:99537800-99548200 Weak transcription HUES48 Cell Line embryonic stem cell
7 chr3:99537800-99552400 Weak transcription Pancreas Pancrea
8 chr3:99537800-99561800 Weak transcription Stomach Smooth Muscle stomach
9 chr3:99537800-99562400 Weak transcription Left Ventricle heart
10 chr3:99538000-99550400 Weak transcription iPS-20b Cell Line embryonic stem cell
11 chr3:99538000-99550800 Weak transcription Brain Anterior Caudate brain
12 chr3:99538000-99552000 Weak transcription Fetal Intestine Small intestine
13 chr3:99538000-99552400 Weak transcription Fetal Muscle Leg muscle
14 chr3:99538000-99556000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr3:99538000-99556800 Weak transcription Sigmoid Colon Sigmoid Colon
16 chr3:99538000-99563600 Weak transcription Primary B cells from peripheral blood blood
17 chr3:99538200-99547200 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr3:99538200-99550800 Weak transcription Primary T helper 17 cells PMA-I stimulated --
19 chr3:99538200-99555400 Weak transcription Breast Myoepithelial Primary Cells Breast
20 chr3:99538200-99584600 Weak transcription Primary T cells from cord blood blood
21 chr3:99538400-99550800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
22 chr3:99538400-99551000 Weak transcription Primary B cells from cord blood blood
23 chr3:99540200-99550600 Weak transcription Primary T killer memory cells from peripheral blood blood
24 chr3:99540800-99552000 Weak transcription GM12878-XiMat blood
25 chr3:99541200-99550400 Weak transcription Primary T helper cells PMA-I stimulated --
26 chr3:99542800-99548200 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr3:99542800-99548400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:99543000-99551000 Weak transcription Small Intestine intestine
29 chr3:99543000-99557200 Weak transcription Psoas Muscle Psoas
30 chr3:99543000-99562600 Weak transcription Placenta Placenta
31 chr3:99543400-99547600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr3:99544200-99550600 Weak transcription HUES64 Cell Line embryonic stem cell
33 chr3:99544200-99550800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
34 chr3:99544200-99561800 Weak transcription NHLF lung
35 chr3:99544200-99564800 Weak transcription K562 blood
36 chr3:99544400-99549200 Weak transcription HepG2 liver
37 chr3:99544400-99554400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr3:99544400-99557800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr3:99544400-99561800 Weak transcription ES-I3 Cell Line embryonic stem cell
40 chr3:99544400-99561800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
41 chr3:99544800-99558000 Weak transcription NHEK skin
42 chr3:99545000-99557800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
43 chr3:99545000-99558000 Weak transcription HMEC breast
44 chr3:99545000-99562000 Weak transcription HSMM muscle
45 chr3:99545400-99552200 Weak transcription Fetal Stomach stomach
46 chr3:99545600-99551000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015