Variant report

Variant	rs55872747
Chromosome Location	chr8:125514498-125514499
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125512614..125515579-chr8:125518268..125520554,3	K562	blood:
2	chr8:125513435..125515604-chr8:125533933..125535503,2	K562	blood:
3	chr8:125488240..125490491-chr8:125514107..125516385,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147687	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11542673	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11986208	0.87[ASN][1000 genomes]
rs16899649	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16899653	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3829038	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4301437	0.87[ASN][1000 genomes]
rs4870899	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4870902	0.85[EUR][1000 genomes]
rs4871493	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4871496	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4871497	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55759812	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55946925	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56158167	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56291877	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67764028	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72713064	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713066	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713068	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713072	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713074	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713078	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72713081	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713082	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713088	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72713090	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72713094	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72713101	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714703	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714704	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714706	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714707	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72714712	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531508	chr8:125390194-125587953	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125488200-125515800	Weak transcription	Lung	lung
2	chr8:125488200-125550400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:125489000-125519800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:125489000-125531200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:125489000-125541200	Weak transcription	Gastric	stomach
6	chr8:125489000-125543400	Weak transcription	Small Intestine	intestine
7	chr8:125493200-125539400	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr8:125496600-125549600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr8:125496800-125521200	Weak transcription	Fetal Heart	heart
10	chr8:125496800-125547400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:125499000-125537200	Weak transcription	Esophagus	oesophagus
12	chr8:125499200-125515800	Weak transcription	Right Ventricle	heart
13	chr8:125499800-125515800	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:125500000-125526200	Weak transcription	Colonic Mucosa	Colon
15	chr8:125500000-125538000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr8:125500000-125538400	Weak transcription	Psoas Muscle	Psoas
17	chr8:125500000-125549600	Weak transcription	Fetal Brain Male	brain
18	chr8:125500200-125530800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:125500400-125526400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:125501600-125514800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr8:125501600-125514800	Weak transcription	GM12878-XiMat	blood
22	chr8:125501600-125516000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr8:125501600-125524600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr8:125501600-125535000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr8:125501600-125550000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr8:125501800-125514800	Weak transcription	HUVEC	blood vessel
27	chr8:125502000-125515800	Weak transcription	HSMMtube	muscle
28	chr8:125502400-125514800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:125503800-125514800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr8:125503800-125514800	Weak transcription	Brain Anterior Caudate	brain
31	chr8:125503800-125515800	Weak transcription	Thymus	Thymus
32	chr8:125503800-125518800	Weak transcription	Brain Hippocampus Middle	brain
33	chr8:125504000-125515400	Weak transcription	Fetal Lung	lung
34	chr8:125504000-125515800	Weak transcription	HMEC	breast
35	chr8:125504000-125518800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr8:125504000-125518800	Weak transcription	Brain Substantia Nigra	brain
37	chr8:125504000-125521200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr8:125504000-125524800	Weak transcription	Pancreas	Pancrea
39	chr8:125504000-125525000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr8:125504000-125525800	Weak transcription	NHLF	lung
41	chr8:125504000-125550800	Weak transcription	Spleen	Spleen
42	chr8:125504200-125515000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr8:125504200-125515000	Weak transcription	Brain Germinal Matrix	brain
44	chr8:125504200-125515400	Weak transcription	NH-A	brain
45	chr8:125504400-125515000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr8:125504400-125518800	Weak transcription	Ovary	ovary
47	chr8:125504600-125514800	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:125504600-125514800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr8:125505800-125538600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:125506000-125538600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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