Variant report

Variant	rs558730666
Chromosome Location	chr12:117087523-117087524
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:37 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560321	chr12:117083560-117087901	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv560322	chr12:117083560-117088109	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1816116	chr12:117084285-117088109	Bivalent Enhancer Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv560323	chr12:117084285-117088109	Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3492852	chr12:117086484-117088507	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv7478	chr12:117086655-117088382	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
7	esv3492896	chr12:117086740-117088304	Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
8	esv3492841	chr12:117086790-117088265	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
9	esv3492874	chr12:117086802-117088270	ZNF genes & repeats Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
10	esv3492863	chr12:117086804-117088234	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
11	esv3209	chr12:117086820-117088319	ZNF genes & repeats Weak transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
12	esv3492907	chr12:117086866-117088209	Enhancers Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
13	nsv53379	chr12:117086885-117088223	Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
14	esv3492885	chr12:117086897-117088549	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv17411	chr12:117087243-117088170	Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
16	nsv560324	chr12:117087267-117087901	Weak transcription Bivalent/Poised TSS Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv560325	chr12:117087267-117087956	Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
18	nsv560326	chr12:117087267-117088058	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	nsv560327	chr12:117087267-117088109	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv1823873	chr12:117087267-117090452	Bivalent Enhancer Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv560328	chr12:117087267-117090452	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
22	nsv560329	chr12:117087267-117093237	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv1794859	chr12:117087267-117103935	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
24	nsv560330	chr12:117087318-117088058	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
25	nsv560331	chr12:117087369-117088007	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS	n/a	n/a	inside rSNPs	diseases
26	nsv560332	chr12:117087369-117088058	Weak transcription Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
27	nsv560333	chr12:117087369-117088109	Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
28	nsv560334	chr12:117087369-117090452	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
29	nsv560335	chr12:117087424-117088007	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS	n/a	n/a	inside rSNPs	diseases
30	nsv560336	chr12:117087424-117088058	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
31	nsv560337	chr12:117087424-117088109	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
32	nsv560338	chr12:117087424-117090452	Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv560339	chr12:117087497-117088058	Enhancers Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
34	nsv560340	chr12:117087497-117088109	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
35	nsv560341	chr12:117087497-117090452	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv560342	chr12:117087497-117093237	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv560343	chr12:117087497-117096007	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117080600-117088000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:117080600-117088000	Weak transcription	Adipose Nuclei	Adipose
3	chr12:117083200-117088200	Weak transcription	Right Atrium	heart
4	chr12:117084000-117088000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr12:117084000-117088400	Weak transcription	Lung	lung
6	chr12:117084000-117093200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr12:117084200-117088000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr12:117084600-117088200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:117086400-117087800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr12:117086600-117088000	Weak transcription	Pancreas	Pancrea
11	chr12:117086600-117088000	Weak transcription	Dnd41	blood
12	chr12:117086800-117088200	Weak transcription	Thymus	Thymus
13	chr12:117087400-117087800	Weak transcription	Fetal Thymus	thymus

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