Variant report

Variant	rs558735386
Chromosome Location	chr15:73975982-73975983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr15:73975982-73976232	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
2	RFX5	chr15:73975605-73976782	Hela-S3	cervix:	n/a	n/a
3	RFX5	chr15:73975958-73976423	HepG2	liver:	n/a	n/a
4	CTCF	chr15:73975940-73976090	HA-sp	spinal cord:	n/a	n/a
5	CTCF	chr15:73975960-73976110	WI-38	lung:	n/a	chr15:73976103-73976110
6	HDAC2	chr15:73975962-73976708	MCF-7	breast:	n/a	chr15:73976191-73976205 chr15:73976190-73976204 chr15:73975990-73976009
7	TBP	chr15:73975961-73976923	H1-hESC	embryonic stem cell:	n/a	n/a
8	MAZ	chr15:73975912-73977192	K562	blood:	n/a	n/a
9	POLR2A	chr15:73975934-73976813	SK-N-SH	brain:	n/a	n/a
10	CTCF	chr15:73975926-73976322	IMR90	lung:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
11	CTCF	chr15:73975960-73976110	HPF	lung:	n/a	chr15:73976103-73976110
12	RCOR1	chr15:73975733-73976333	HepG2	liver:	n/a	n/a
13	ZNF143	chr15:73975748-73976325	K562	blood:	n/a	n/a
14	REST	chr15:73975721-73978190	H1-neurons	neurons:	n/a	chr15:73976590-73976603 chr15:73977028-73977041 chr15:73976851-73976864 chr15:73976907-73976920 chr15:73976087-73976096
15	CTCF	chr15:73975872-73976492	HCT-116	colon:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
16	POLR2A	chr15:73975950-73977872	H1-neurons	neurons:	n/a	n/a
17	GTF2F1	chr15:73975942-73976475	Hela-S3	cervix:	n/a	n/a
18	RAD21	chr15:73975895-73976402	ECC-1	luminal epithelium:	n/a	chr15:73976101-73976110 chr15:73976155-73976165 chr15:73976100-73976119
19	CTCF	chr15:73975873-73976274	H1-hESC	embryonic stem cell:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
20	CTCF	chr15:73975836-73976345	MCF-7	breast:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
21	MAX	chr15:73975961-73976976	MCF-7	breast:	n/a	n/a
22	RAD21	chr15:73975849-73976429	MCF-7	breast:	n/a	chr15:73976101-73976110 chr15:73976155-73976165 chr15:73976100-73976119
23	BHLHE40	chr15:73975873-73976186	K562	blood:	n/a	n/a
24	CTCF	chr15:73975981-73976221	GM19239	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
25	ZKSCAN1	chr15:73975957-73976624	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr15:73975900-73976050	HMEC	breast:	n/a	n/a
27	CTCF	chr15:73975962-73976275	H1-hESC	embryonic stem cell:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
28	CTCF	chr15:73975962-73976167	A549	lung:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
29	CTCF	chr15:73975970-73976236	HepG2	liver:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
30	MAX	chr15:73975955-73976277	K562	blood:	n/a	n/a
31	NR2F2	chr15:73975847-73976883	MCF-7	breast:	n/a	n/a
32	YY1	chr15:73975975-73976179	K562	blood:	n/a	chr15:73976152-73976163 chr15:73976159-73976170
33	ELF1	chr15:73975943-73976383	GM12878	blood:	n/a	chr15:73976194-73976205
34	CHD2	chr15:73975942-73977765	Hela-S3	cervix:	n/a	n/a
35	CTCF	chr15:73975900-73976050	HAc	cerebellar:	n/a	n/a
36	CTCF	chr15:73975980-73976130	GM12875	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
37	UBTF	chr15:73975950-73976912	K562	blood:	n/a	n/a
38	HDAC2	chr15:73975961-73976876	HepG2	liver:	n/a	chr15:73976191-73976205 chr15:73976190-73976204 chr15:73975990-73976009
39	CTCF	chr15:73975827-73976275	K562	blood:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
40	RAD21	chr15:73975970-73976454	IMR90	lung:	n/a	chr15:73976101-73976110 chr15:73976155-73976165 chr15:73976100-73976119
41	CTCF	chr15:73975970-73976221	Kidney_OC	kidney:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
42	BHLHE40	chr15:73975954-73976556	HepG2	liver:	n/a	n/a
43	TCF12	chr15:73975866-73976777	ECC-1	luminal epithelium:	n/a	n/a
44	POLR2A	chr15:73975912-73977770	H1-neurons	neurons:	n/a	n/a
45	POLR2A	chr15:73975969-73976991	PFSK-1	brain:	n/a	n/a
46	CTCF	chr15:73975920-73976070	HFF-Myc	foreskin:	n/a	n/a
47	CTCF	chr15:73975900-73976050	AG04450	lung:	n/a	n/a
48	CTCF	chr15:73975980-73976130	HepG2	liver:	n/a	chr15:73976099-73976117 chr15:73976101-73976122 chr15:73976103-73976110
49	MXI1	chr15:73975959-73977393	HepG2	liver:	n/a	n/a
50	ZNF143	chr15:73975799-73976464	Hela-S3	cervix:	n/a	chr15:73976445-73976464

No.	Distal block	Cell Line	Cell type
1	chr15:73923335..73928580-chr15:73974636..73980559,10	MCF-7	breast:
2	chr15:73975489..73977527-chr15:73994222..73997098,2	MCF-7	breast:
3	chr15:73921937..73932817-chr15:73973872..73983627,19	MCF-7	breast:
4	chr15:73975048..73981150-chr15:73987719..73994346,13	MCF-7	breast:

Variant related genes	Relation type
CD276	TF binding region
ENSG00000103855	Chromatin interaction
ENSG00000156642	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037540	chr15:73712637-73982420	Weak transcription Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3434440	chr15:73975149-73978997	Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3341618	chr15:73975424-73978272	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73970000-73976000	Weak transcription	Pancreas	Pancrea
2	chr15:73970000-73976000	Weak transcription	Right Atrium	heart
3	chr15:73971800-73976000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:73972000-73977000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr15:73972200-73976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr15:73972400-73976000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr15:73973600-73976000	Enhancers	Placenta	Placenta
8	chr15:73973800-73976000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr15:73974000-73976000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr15:73974000-73976000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:73974200-73976000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:73974200-73976000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr15:73974200-73976000	Enhancers	NHDF-Ad	bronchial
14	chr15:73974200-73976200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:73974400-73976000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:73974400-73976200	Enhancers	HSMM	muscle
17	chr15:73974400-73976200	Enhancers	HSMMtube	muscle
18	chr15:73974600-73976000	Enhancers	Fetal Muscle Leg	muscle
19	chr15:73974600-73976000	Weak transcription	NHEK	skin
20	chr15:73974800-73976000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr15:73974800-73976000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:73974800-73976000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr15:73974800-73976000	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:73974800-73976000	Enhancers	Skeletal Muscle Female	skeletal muscle
25	chr15:73975000-73976000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr15:73975000-73976000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr15:73975000-73976200	Weak transcription	Left Ventricle	heart
28	chr15:73975200-73976000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr15:73975600-73976000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:73975600-73976000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr15:73975600-73976000	Enhancers	Liver	Liver
32	chr15:73975600-73976000	Enhancers	Brain Substantia Nigra	brain
33	chr15:73975600-73976200	Enhancers	Rectal Mucosa Donor 29	rectum
34	chr15:73975600-73976200	Bivalent Enhancer	Stomach Mucosa	stomach
35	chr15:73975600-73976400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr15:73975600-73976400	Enhancers	Fetal Heart	heart
37	chr15:73975800-73976000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr15:73975800-73976000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
39	chr15:73975800-73976000	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr15:73975800-73976000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr15:73975800-73976000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:73975800-73976000	Active TSS	Colon Smooth Muscle	Colon
43	chr15:73975800-73976000	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
44	chr15:73975800-73976000	Enhancers	Fetal Stomach	stomach
45	chr15:73975800-73976000	Enhancers	Psoas Muscle	Psoas
46	chr15:73975800-73976000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr15:73975800-73976000	Enhancers	Right Ventricle	heart
48	chr15:73975800-73976000	Enhancers	Stomach Smooth Muscle	stomach
49	chr15:73975800-73976000	Flanking Active TSS	Hela-S3	cervix
50	chr15:73975800-73976000	Enhancers	NH-A	brain

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