Variant report

Variant	rs558742154
Chromosome Location	chr4:110340337-110340338
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:110340328-110340664	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr4:110340273-110340568	K562	blood:	n/a	n/a

Variant related genes	Relation type
SEC24B-AS1	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1793428	chr4:110340134-110355591	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110328800-110353600	Weak transcription	Brain Germinal Matrix	brain
2	chr4:110332400-110340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:110333200-110352800	Weak transcription	Fetal Intestine Small	intestine
4	chr4:110333400-110345400	Weak transcription	Fetal Stomach	stomach
5	chr4:110333800-110353400	Weak transcription	HSMM	muscle
6	chr4:110334400-110351600	Weak transcription	Fetal Muscle Leg	muscle
7	chr4:110336600-110340400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:110339600-110341600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:110339600-110341600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr4:110339800-110341400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:110339800-110341400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr4:110340000-110341400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:110340000-110341400	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr4:110340200-110340800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:110340200-110340800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
16	chr4:110340200-110341000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr4:110340200-110341000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr4:110340200-110341600	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr4:110340200-110341600	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:110340200-110341800	Enhancers	H1 Cell Line	embryonic stem cell
21	chr4:110340200-110341800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:110340200-110342600	Enhancers	H9 Cell Line	embryonic stem cell
23	chr4:110340200-110343800	Weak transcription	Right Atrium	heart

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