Variant report

Variant	rs558744648
Chromosome Location	chr7:150864504-150864505
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150820141..150822604-chr7:150863393..150866266,2	MCF-7	breast:
2	chr7:150862132..150865299-chr7:150928833..150931121,3	MCF-7	breast:
3	chr7:150863436..150865058-chr7:150871430..150873448,2	MCF-7	breast:
4	chr7:150852560..150855237-chr7:150861683..150864566,2	MCF-7	breast:
5	chr7:150823153..150825845-chr7:150864127..150866768,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164900	Chromatin interaction
ENSG00000033100	Chromatin interaction
ENSG00000133612	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	esv3427035	chr7:150862769-150866067	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3394866	chr7:150863244-150866392	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150863000-150864800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr7:150863600-150865000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
3	chr7:150863600-150865600	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
4	chr7:150863800-150864800	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
5	chr7:150863800-150865400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:150863800-150865400	Bivalent Enhancer	Placenta	Placenta
7	chr7:150863800-150865600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
8	chr7:150863800-150865600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr7:150863800-150865600	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
10	chr7:150863800-150865800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:150863800-150865800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr7:150863800-150865800	Bivalent Enhancer	Fetal Lung	lung
13	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
14	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
15	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
17	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood
22	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
23	chr7:150864000-150864600	Flanking Active TSS	Pancreas	Pancrea
24	chr7:150864000-150864600	Flanking Active TSS	Right Atrium	heart
25	chr7:150864000-150864600	Flanking Active TSS	Right Ventricle	heart
26	chr7:150864000-150864600	Bivalent Enhancer	Spleen	Spleen
27	chr7:150864000-150864600	Flanking Bivalent TSS/Enh	HMEC	breast
28	chr7:150864000-150864800	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:150864000-150865000	Enhancers	Gastric	stomach
30	chr7:150864000-150865000	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum
31	chr7:150864000-150865000	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
32	chr7:150864000-150865200	Bivalent/Poised TSS	HSMMtube	muscle
33	chr7:150864000-150865400	Bivalent/Poised TSS	Primary T cells from cord blood	blood
34	chr7:150864000-150865400	Bivalent/Poised TSS	NHEK	skin
35	chr7:150864000-150865600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
36	chr7:150864000-150865600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:150864000-150865600	Enhancers	Liver	Liver
38	chr7:150864000-150865600	Flanking Bivalent TSS/Enh	Colonic Mucosa	Colon
39	chr7:150864000-150865600	Bivalent/Poised TSS	A549	lung
40	chr7:150864000-150865600	Bivalent/Poised TSS	HepG2	liver
41	chr7:150864000-150865800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
42	chr7:150864200-150864600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr7:150864200-150864600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:150864200-150864600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr7:150864200-150864600	Flanking Bivalent TSS/Enh	Muscle Satellite Cultured Cells	--
46	chr7:150864200-150864600	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
47	chr7:150864200-150864600	Flanking Bivalent TSS/Enh	Esophagus	oesophagus
48	chr7:150864200-150864600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
49	chr7:150864200-150864600	Bivalent/Poised TSS	NH-A	brain
50	chr7:150864200-150864800	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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