Variant report

Variant	rs558750
Chromosome Location	chr1:67226357-67226358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs501193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869413	chr1:67082512-67414286	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv830093	chr1:67173594-67348264	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:67219000-67227200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr1:67221200-67227400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:67221600-67236400	Weak transcription	Liver	Liver
4	chr1:67222800-67236200	Weak transcription	Psoas Muscle	Psoas
5	chr1:67224000-67227200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:67224400-67228400	Weak transcription	Fetal Heart	heart
7	chr1:67224800-67226800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr1:67225400-67227400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr1:67225800-67227800	Strong transcription	Primary hematopoietic stem cells	blood
10	chr1:67226200-67227400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr1:67226200-67228400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr1:67226200-67231400	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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