Variant report

Variant	rs558752159
Chromosome Location	chr10:117858495-117858496
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:117858148..117861915-chr10:118033235..118035636,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428568	chr10:117806874-117972993	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3449389	chr10:117806874-118102404	Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv34187	chr10:117857916-117894117	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:117855200-117859200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr10:117855400-117859000	Enhancers	Fetal Muscle Leg	muscle
3	chr10:117855600-117859200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:117856000-117859400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:117856400-117859200	Enhancers	HSMMtube	muscle
6	chr10:117856800-117858600	Enhancers	Brain Anterior Caudate	brain
7	chr10:117856800-117859200	Enhancers	Duodenum Smooth Muscle	Duodenum
8	chr10:117857000-117867600	Weak transcription	Liver	Liver
9	chr10:117857000-117872800	Weak transcription	HSMM	muscle
10	chr10:117857200-117859200	Enhancers	Fetal Kidney	kidney
11	chr10:117857200-117859600	Enhancers	Colon Smooth Muscle	Colon
12	chr10:117857400-117859800	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:117857600-117858600	Weak transcription	Brain Angular Gyrus	brain
14	chr10:117857600-117858600	Bivalent Enhancer	Brain Germinal Matrix	brain
15	chr10:117857800-117860200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr10:117858000-117858600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr10:117858000-117859000	Enhancers	Adipose Nuclei	Adipose
18	chr10:117858200-117858600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:117858200-117859200	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr10:117858200-117872200	Weak transcription	Fetal Muscle Trunk	muscle
21	chr10:117858400-117858600	Enhancers	Brain Hippocampus Middle	brain
22	chr10:117858400-117858600	Enhancers	Stomach Smooth Muscle	stomach
23	chr10:117858400-117858800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:117858400-117863400	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links