Variant report

Variant	rs55876766
Chromosome Location	chr17:66785951-66785952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10468451	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11657578	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12450801	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12952378	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55990301	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8066676	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9893056	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9898526	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9902093	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9903099	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9906922	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9909182	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9913634	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66768600-66789200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr17:66780400-66786600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr17:66780400-66786800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr17:66780400-66787600	Weak transcription	Right Atrium	heart
5	chr17:66780800-66786400	Weak transcription	NHDF-Ad	bronchial
6	chr17:66780800-66786600	Weak transcription	Ovary	ovary
7	chr17:66781000-66786400	Weak transcription	Adipose Nuclei	Adipose
8	chr17:66782200-66786400	Weak transcription	Fetal Lung	lung
9	chr17:66782200-66786400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr17:66782200-66786600	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr17:66784800-66789800	Enhancers	HepG2	liver
12	chr17:66785000-66786400	Weak transcription	Spleen	Spleen
13	chr17:66785000-66790600	Enhancers	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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