Variant report

Variant	rs55876959
Chromosome Location	chr15:74826829-74826830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74823864..74826848-chr15:74827847..74829990,2	MCF-7	breast:
2	chr15:74822467..74830075-chr15:74830932..74835759,12	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179361	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17861094	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1809847	chr15:74734500-74948063	Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74818200-74832400	Weak transcription	Pancreas	Pancrea
2	chr15:74822000-74832600	Weak transcription	Aorta	Aorta
3	chr15:74822800-74827200	Weak transcription	GM12878-XiMat	blood
4	chr15:74823600-74828000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr15:74823800-74827800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74824000-74832000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74824000-74832400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:74824000-74832400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr15:74824200-74827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:74824200-74832600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr15:74824400-74827000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:74824400-74827600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:74824400-74827600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:74824400-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74824400-74831800	Weak transcription	NHLF	lung
16	chr15:74824400-74832200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:74824400-74832400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr15:74824600-74827200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr15:74824600-74827200	Weak transcription	HMEC	breast
20	chr15:74824600-74827200	Weak transcription	NHEK	skin
21	chr15:74824600-74827600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:74824600-74827600	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:74824600-74827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:74824600-74827600	Weak transcription	Osteobl	bone
25	chr15:74824600-74827800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr15:74824600-74828000	Weak transcription	NH-A	brain
27	chr15:74824600-74829600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:74824600-74829800	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr15:74824600-74832200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:74824600-74832200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr15:74824600-74832400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr15:74824800-74831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr15:74824800-74832000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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