Variant report

Variant	rs55877472
Chromosome Location	chr5:90663406-90663407
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:90450199..90451897-chr5:90663061..90665022,2	K562	blood:
2	chr5:90546059..90547829-chr5:90662674..90664478,2	K562	blood:
3	chr5:90576170..90577887-chr5:90662963..90664594,2	K562	blood:
4	chr5:90626594..90630452-chr5:90662107..90665248,4	K562	blood:
5	chr5:90662124..90665003-chr5:90731966..90733840,2	K562	blood:
6	chr5:90637573..90640340-chr5:90662979..90665694,4	K562	blood:
7	chr5:90210175..90212075-chr5:90662640..90664980,2	K562	blood:
8	chr5:90520141..90522077-chr5:90661163..90663612,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000234292	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56082303	1.00[AFR][1000 genomes]
rs62376573	0.81[EUR][1000 genomes]
rs72771527	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs72786362	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90646400-90663800	Weak transcription	Thymus	Thymus
2	chr5:90650600-90663800	Weak transcription	Spleen	Spleen
3	chr5:90653400-90663800	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr5:90653400-90666800	Weak transcription	Pancreas	Pancrea
5	chr5:90653400-90670400	Weak transcription	Right Atrium	heart
6	chr5:90653600-90663800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:90653600-90665200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr5:90653600-90665400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:90653600-90666200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr5:90653600-90666200	Weak transcription	Psoas Muscle	Psoas
11	chr5:90653600-90666400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr5:90653600-90666800	Weak transcription	Gastric	stomach
13	chr5:90653600-90669400	Weak transcription	Small Intestine	intestine
14	chr5:90653800-90665800	Weak transcription	HepG2	liver
15	chr5:90654000-90663800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:90654600-90663800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr5:90654600-90666200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:90654800-90665400	Weak transcription	Stomach Mucosa	stomach
19	chr5:90654800-90665800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:90656600-90663800	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr5:90657000-90664200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr5:90657800-90664200	Weak transcription	Hela-S3	cervix
23	chr5:90657800-90664400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr5:90658000-90663600	Weak transcription	HSMMtube	muscle
25	chr5:90658000-90663800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr5:90659000-90664000	Weak transcription	GM12878-XiMat	blood
27	chr5:90659000-90669400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr5:90659400-90663800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr5:90659800-90666400	Weak transcription	Aorta	Aorta
30	chr5:90660000-90663800	Weak transcription	Lung	lung
31	chr5:90660000-90669400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr5:90660400-90663800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr5:90660400-90665400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr5:90661000-90663800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:90661000-90664000	Weak transcription	NHDF-Ad	bronchial
36	chr5:90661000-90665200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr5:90661400-90664000	Weak transcription	Left Ventricle	heart
38	chr5:90661400-90667800	Weak transcription	Colonic Mucosa	Colon
39	chr5:90661600-90663800	Weak transcription	HUVEC	blood vessel
40	chr5:90661600-90665200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr5:90661600-90665400	Weak transcription	NHEK	skin
42	chr5:90661600-90669400	Weak transcription	Esophagus	oesophagus
43	chr5:90661800-90663800	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr5:90662000-90663800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr5:90662000-90663800	Weak transcription	HMEC	breast
46	chr5:90662000-90664000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:90662000-90664000	Weak transcription	Dnd41	blood
48	chr5:90662000-90665400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr5:90662000-90668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr5:90662200-90664000	Weak transcription	K562	blood

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