Variant report

Variant	rs55877951
Chromosome Location	chr3:140926853-140926854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1871278	0.81[EUR][1000 genomes]
rs2291040	0.84[EUR][1000 genomes]
rs55655840	0.84[EUR][1000 genomes]
rs55839795	0.84[EUR][1000 genomes]
rs56293064	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73232931	0.84[EUR][1000 genomes]
rs73234877	1.00[AFR][1000 genomes]
rs73236512	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73236514	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73236515	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73236516	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73236517	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73236521	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140923200-140931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:140923600-140931400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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