Variant report

Variant	rs55878048
Chromosome Location	chr21:15740867-15740868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:15738236..15741507-chr21:15753904..15757362,3	K562	blood:
2	chr21:15738717..15742131-chr21:15743462..15746963,4	K562	blood:
3	chr21:15739043..15741032-chr21:15755736..15757362,2	K562	blood:
4	chr21:15738236..15741206-chr21:15753262..15755404,2	K562	blood:
5	chr21:15733062..15735967-chr21:15740026..15741975,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155304	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs58239702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60222975	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064554	chr21:15676222-15809321	Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1061686	chr21:15724570-15765777	Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv962647	chr21:15739771-15741418	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15731600-15744800	Weak transcription	Hela-S3	cervix
2	chr21:15734400-15745600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr21:15734600-15744800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr21:15734600-15744800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr21:15734600-15745400	Weak transcription	HUVEC	blood vessel
6	chr21:15734800-15745400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr21:15735200-15744600	Weak transcription	NHEK	skin
8	chr21:15735200-15744800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr21:15735200-15744800	Weak transcription	HMEC	breast
10	chr21:15735200-15745200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr21:15737400-15745400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr21:15738600-15746000	Weak transcription	Ovary	ovary
13	chr21:15739000-15744600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr21:15739200-15745000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr21:15739200-15747800	Weak transcription	Esophagus	oesophagus
16	chr21:15739600-15745000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr21:15739800-15742400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr21:15739800-15743800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr21:15739800-15744600	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr21:15739800-15745600	Weak transcription	GM12878-XiMat	blood
21	chr21:15739800-15746000	Weak transcription	K562	blood
22	chr21:15740400-15744800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr21:15740400-15745200	Weak transcription	Brain Germinal Matrix	brain
24	chr21:15740400-15746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr21:15740600-15744800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr21:15740600-15745000	Weak transcription	Primary B cells from cord blood	blood
27	chr21:15740600-15745000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr21:15740600-15745400	Weak transcription	Stomach Smooth Muscle	stomach
29	chr21:15740600-15746000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr21:15740600-15746000	Weak transcription	NHLF	lung
31	chr21:15740800-15746000	Weak transcription	Left Ventricle	heart

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