Variant report

Variant	rs55878365
Chromosome Location	chr8:10194645-10194646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP1L1-9	chr8:10194292-10194674	NONHSAT124982

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4841319	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56231036	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021921	chr8:9958259-10212555	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1030934	chr8:10065169-10561161	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1016347	chr8:10091475-10223667	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890347	chr8:10153082-10331636	Flanking Active TSS ZNF genes & repeats Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1022994	chr8:10190618-10660122	Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv539466	chr8:10190618-10660122	Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10192400-10196800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:10192600-10206200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr8:10192600-10282400	Weak transcription	Gastric	stomach
4	chr8:10192800-10195600	Weak transcription	Brain Angular Gyrus	brain
5	chr8:10192800-10197600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:10192800-10197800	Enhancers	Fetal Brain Male	brain
7	chr8:10192800-10206400	Weak transcription	Thymus	Thymus
8	chr8:10193000-10195600	Weak transcription	Liver	Liver
9	chr8:10193000-10196400	Weak transcription	HepG2	liver
10	chr8:10193000-10215400	Weak transcription	Fetal Intestine Small	intestine
11	chr8:10193000-10235000	Weak transcription	Pancreas	Pancrea
12	chr8:10193200-10196800	Enhancers	H1 Cell Line	embryonic stem cell
13	chr8:10193200-10203800	Weak transcription	Right Atrium	heart
14	chr8:10193400-10195200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr8:10193400-10195600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr8:10193400-10195600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr8:10193400-10198800	Weak transcription	NHEK	skin
18	chr8:10193400-10202400	Weak transcription	Right Ventricle	heart
19	chr8:10193600-10195000	Weak transcription	Adipose Nuclei	Adipose
20	chr8:10193600-10195200	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr8:10193600-10195400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr8:10193600-10195400	Enhancers	Brain Germinal Matrix	brain
23	chr8:10193600-10195600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:10193600-10195800	Weak transcription	Brain Substantia Nigra	brain
25	chr8:10193600-10195800	Weak transcription	Fetal Thymus	thymus
26	chr8:10193600-10196000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:10193600-10196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:10193600-10196200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr8:10193600-10196400	Weak transcription	Brain Hippocampus Middle	brain
30	chr8:10193600-10196600	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr8:10193600-10196600	Enhancers	Fetal Brain Female	brain
32	chr8:10193600-10196800	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr8:10193600-10197400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr8:10193600-10197800	Weak transcription	Primary T cells from cord blood	blood
35	chr8:10193600-10198800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr8:10193600-10199400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr8:10193600-10200600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr8:10193600-10202800	Weak transcription	Brain Anterior Caudate	brain
39	chr8:10193600-10220400	Weak transcription	Brain Cingulate Gyrus	brain
40	chr8:10194200-10195200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr8:10194200-10196800	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr8:10194400-10195600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr8:10194400-10195800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:10194600-10195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr8:10194600-10195000	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr8:10194600-10195000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr8:10194600-10196000	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr8:10194600-10196800	Enhancers	iPS-18 Cell Line	embryonic stem cell
49	chr8:10194600-10197000	Enhancers	HUES48 Cell Line	embryonic stem cell

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