Variant report

Variant	rs55878408
Chromosome Location	chr10:89877238-89877239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:89875899..89878247-chr10:89928354..89931128,2	MCF-7	breast:
2	chr10:89874131..89877304-chr10:89878864..89883197,3	MCF-7	breast:
3	chr10:89620262..89623125-chr10:89876779..89879481,3	MCF-7	breast:
4	chr10:89872459..89874892-chr10:89876051..89878099,2	K562	blood:
5	chr10:89620141..89628673-chr10:89867993..89880509,31	MCF-7	breast:
6	chr10:89621552..89623205-chr10:89876367..89879055,2	K562	blood:
7	chr10:89871797..89873959-chr10:89875999..89877551,2	K562	blood:

Variant related genes	Relation type
ENSG00000171862	Chromatin interaction
ENSG00000227268	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12768533	1.00[AFR][1000 genomes]
rs72816158	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89869600-89881400	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:89872200-89878800	Enhancers	Fetal Thymus	thymus
3	chr10:89872400-89881200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:89872600-89877800	Enhancers	Primary hematopoietic stem cells	blood
5	chr10:89872600-89878200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr10:89872600-89878200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr10:89872800-89877400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:89872800-89878800	Enhancers	Primary T cells from cord blood	blood
9	chr10:89873200-89878200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:89873800-89879000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr10:89874000-89877800	Weak transcription	Adipose Nuclei	Adipose
12	chr10:89874000-89878000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:89874000-89880200	Weak transcription	Right Atrium	heart
14	chr10:89874000-89881200	Enhancers	Primary B cells from cord blood	blood
15	chr10:89874000-89891400	Weak transcription	Left Ventricle	heart
16	chr10:89874200-89877800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr10:89874200-89878600	Weak transcription	Stomach Mucosa	stomach
18	chr10:89874600-89878000	Weak transcription	Liver	Liver
19	chr10:89874600-89878800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
20	chr10:89874600-89879800	Weak transcription	Lung	lung
21	chr10:89874600-89880800	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:89874600-89882400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:89874800-89877800	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr10:89874800-89877800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:89875200-89879200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr10:89875400-89877400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:89875400-89877400	Enhancers	HMEC	breast
28	chr10:89875400-89877400	Enhancers	NHEK	skin
29	chr10:89875400-89877800	Enhancers	Osteobl	bone
30	chr10:89875400-89878200	Enhancers	Thymus	Thymus
31	chr10:89875400-89878600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:89875400-89879000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr10:89875400-89879000	Enhancers	HSMMtube	muscle
34	chr10:89875600-89877600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:89875600-89878000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr10:89876000-89878000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr10:89876000-89880600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr10:89876200-89878200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
39	chr10:89876200-89878400	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr10:89876200-89878400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:89876200-89878400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr10:89876200-89878400	Enhancers	Primary T killer memory cells from peripheral blood	blood
43	chr10:89876200-89878600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:89876200-89878800	Enhancers	Primary T helper cells fromperipheralblood	blood
45	chr10:89876200-89879200	Enhancers	Primary T helper cells PMA-I stimulated	--
46	chr10:89876400-89878200	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr10:89876600-89878800	Enhancers	Primary T cells fromperipheralblood	blood
48	chr10:89876600-89878800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr10:89876600-89879400	Flanking Active TSS	GM12878-XiMat	blood
50	chr10:89876800-89877400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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