Variant report

Variant rs55880210
Chromosome Location chr5:115881618-115881619
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115871000-115890400 Weak transcription Pancreas Pancrea
2 chr5:115871400-115882000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr5:115873200-115883600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
4 chr5:115873200-115889800 Weak transcription Rectal Smooth Muscle rectum
5 chr5:115876400-115886200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr5:115877600-115882000 Enhancers Rectal Mucosa Donor 31 rectum
7 chr5:115877800-115883800 Weak transcription H9 Cell Line embryonic stem cell
8 chr5:115878200-115882000 Weak transcription Brain Cingulate Gyrus brain
9 chr5:115878200-115893200 Enhancers Fetal Adrenal Gland Adrenal Gland
10 chr5:115879400-115883000 Weak transcription Brain Anterior Caudate brain
11 chr5:115880000-115882000 Weak transcription Brain Substantia Nigra brain
12 chr5:115880000-115883600 Weak transcription Small Intestine intestine
13 chr5:115880000-115890400 Weak transcription Colonic Mucosa Colon
14 chr5:115880600-115882000 ZNF genes & repeats Fetal Intestine Small intestine
15 chr5:115880800-115882600 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
16 chr5:115880800-115882800 ZNF genes & repeats Ganglion Eminence derived primary cultured neurospheres brain
17 chr5:115880800-115884000 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:115880800-115900600 Weak transcription Fetal Kidney kidney
19 chr5:115881000-115886200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
20 chr5:115881000-115888200 Weak transcription ES-WA7 Cell Line embryonic stem cell
21 chr5:115881000-115889000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
22 chr5:115881200-115882600 ZNF genes & repeats Cortex derived primary cultured neurospheres brain
23 chr5:115881200-115882600 ZNF genes & repeats Fetal Muscle Leg muscle
24 chr5:115881200-115882600 ZNF genes & repeats HepG2 liver
25 chr5:115881400-115882200 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
26 chr5:115881400-115882200 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
27 chr5:115881400-115882400 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
28 chr5:115881400-115882400 ZNF genes & repeats iPS-15b Cell Line embryonic stem cell
29 chr5:115881400-115882400 ZNF genes & repeats Foreskin Melanocyte Primary Cells skin03 Skin
30 chr5:115881400-115882400 ZNF genes & repeats Liver Liver
31 chr5:115881400-115882400 ZNF genes & repeats Fetal Lung lung
32 chr5:115881400-115882600 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
33 chr5:115881400-115882800 ZNF genes & repeats H1 Cell Line embryonic stem cell
34 chr5:115881600-115881800 ZNF genes & repeats Brain Hippocampus Middle brain
35 chr5:115881600-115882000 Transcr. at gene 5' and 3' ES-I3 Cell Line embryonic stem cell
36 chr5:115881600-115882400 ZNF genes & repeats Fetal Muscle Trunk muscle
37 chr5:115881600-115882600 ZNF genes & repeats HUES64 Cell Line embryonic stem cell
38 chr5:115881600-115883000 ZNF genes & repeats hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
39 chr5:115881600-115884200 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
40 chr5:115881600-115886200 Weak transcription Placenta Placenta
41 chr5:115881600-115888400 Enhancers Fetal Intestine Large intestine

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