Variant report

Variant	rs55882075
Chromosome Location	chr5:179210115-179210116
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:179208821..179211974-chr5:179218731..179221222,3	MCF-7	breast:
2	chr5:179207715..179210288-chr5:179217795..179219761,2	MCF-7	breast:
3	chr5:179210097..179212795-chr5:179213653..179217175,3	MCF-7	breast:
4	chr5:179201375..179203959-chr5:179207512..179210271,2	MCF-7	breast:
5	chr5:179209719..179212653-chr5:179217734..179221028,3	K562	blood:
6	chr5:179207814..179210287-chr5:179215624..179217168,2	MCF-7	breast:
7	chr5:179208668..179210975-chr5:179221347..179223375,2	MCF-7	breast:
8	chr5:179209321..179211104-chr5:179255738..179258099,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000213316	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12656648	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34646062	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56365546	0.82[ASN][1000 genomes]
rs59666900	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62404346	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6867806	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7732112	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949554	chr5:178832325-179309513	Transcr. at gene 5' and 3' Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
2	nsv883270	chr5:178951106-179350387	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	312 gene(s)	inside rSNPs	diseases
3	nsv531997	chr5:179107599-179588082	Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	339 gene(s)	inside rSNPs	diseases
4	nsv469579	chr5:179184831-179360191	Genic enhancers Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
5	nsv883274	chr5:179186397-179310330	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
6	nsv518964	chr5:179193598-179227286	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
7	nsv883275	chr5:179193598-179267783	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Enhancers Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	176 gene(s)	inside rSNPs	diseases
8	nsv883276	chr5:179193598-179310330	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
9	nsv883277	chr5:179193598-179350387	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:179191200-179210400	Strong transcription	Thymus	Thymus
2	chr5:179192200-179210400	Strong transcription	Brain Germinal Matrix	brain
3	chr5:179193000-179210400	Strong transcription	Fetal Stomach	stomach
4	chr5:179194600-179210400	Strong transcription	Fetal Intestine Small	intestine
5	chr5:179196000-179210400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr5:179199800-179214000	Weak transcription	Fetal Brain Male	brain
7	chr5:179201400-179210400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:179202000-179221800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr5:179203400-179211800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:179203400-179213400	Weak transcription	Psoas Muscle	Psoas
11	chr5:179203400-179218200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:179203400-179221600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:179203600-179211600	Weak transcription	NHDF-Ad	bronchial
14	chr5:179203600-179219600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr5:179203600-179220400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:179203600-179222000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr5:179204000-179221200	Weak transcription	Small Intestine	intestine
18	chr5:179204600-179210400	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr5:179205000-179218800	Weak transcription	Right Atrium	heart
20	chr5:179205200-179210400	Enhancers	Primary neutrophils fromperipheralblood	blood
21	chr5:179205200-179220600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr5:179205200-179221800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:179206000-179210200	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr5:179206000-179210400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr5:179206000-179211600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr5:179206000-179220200	Weak transcription	Ovary	ovary
27	chr5:179206400-179214600	Weak transcription	HepG2	liver
28	chr5:179206400-179219200	Weak transcription	Gastric	stomach
29	chr5:179207000-179210400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr5:179207000-179220200	Weak transcription	GM12878-XiMat	blood
31	chr5:179207200-179210800	Weak transcription	NHLF	lung
32	chr5:179207200-179215200	Weak transcription	HSMMtube	muscle
33	chr5:179207200-179218600	Weak transcription	Fetal Muscle Leg	muscle
34	chr5:179207200-179218800	Weak transcription	Adipose Nuclei	Adipose
35	chr5:179207200-179220600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr5:179207400-179211600	Weak transcription	Osteobl	bone
37	chr5:179207400-179212600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr5:179207400-179215200	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:179207400-179218600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr5:179207400-179219400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:179207400-179221000	Weak transcription	Brain Substantia Nigra	brain
42	chr5:179207600-179211600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr5:179207600-179212000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:179207600-179212400	Weak transcription	Esophagus	oesophagus
45	chr5:179207600-179212600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr5:179207600-179213000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr5:179207600-179213400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr5:179207600-179218800	Weak transcription	Fetal Lung	lung
49	chr5:179207600-179219200	Weak transcription	Colonic Mucosa	Colon
50	chr5:179207600-179219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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