Variant report

Variant	rs55884190
Chromosome Location	chr9:94690135-94690136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10992167	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10992170	0.98[ASN][1000 genomes]
rs56747141	0.97[ASN][1000 genomes]
rs6479384	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7029733	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv949008	chr9:94500776-95182133	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv530946	chr9:94633154-94715023	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1050845	chr9:94687959-95312406	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94681400-94691400	Weak transcription	Pancreas	Pancrea
2	chr9:94683600-94691800	Weak transcription	Fetal Lung	lung
3	chr9:94683600-94692000	Weak transcription	K562	blood
4	chr9:94685400-94690400	Weak transcription	Fetal Intestine Small	intestine
5	chr9:94686400-94692400	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:94686600-94690400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr9:94686600-94690600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:94686600-94690800	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:94686600-94696000	Weak transcription	Ovary	ovary
10	chr9:94686800-94690200	Weak transcription	Fetal Stomach	stomach
11	chr9:94688000-94690200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:94688200-94690600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:94688600-94690800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:94689200-94690600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:94689600-94690400	Weak transcription	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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