Variant report

Variant	rs558854649
Chromosome Location	chr5:114706591-114706592
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:114700131..114702425-chr5:114706517..114709440,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv2757132	chr5:114697260-114737583	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2759370	chr5:114697260-114737583	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv882731	chr5:114702503-114721081	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv882732	chr5:114702503-114722599	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv882733	chr5:114702503-114726351	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	esv3470654	chr5:114706116-114721234	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3470655	chr5:114706116-114721234	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv1025594	chr5:114706443-114721081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	nsv441963	chr5:114706443-114721085	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114699800-114706600	Weak transcription	Gastric	stomach
2	chr5:114700200-114715800	Weak transcription	Pancreas	Pancrea
3	chr5:114702000-114707600	Weak transcription	Psoas Muscle	Psoas
4	chr5:114702000-114717800	Weak transcription	Right Atrium	heart
5	chr5:114702200-114711400	Weak transcription	Left Ventricle	heart
6	chr5:114702400-114707600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:114702400-114707600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:114702600-114707600	Weak transcription	Hela-S3	cervix
9	chr5:114702600-114707600	Weak transcription	NHEK	skin
10	chr5:114702600-114707600	Weak transcription	Osteobl	bone
11	chr5:114702600-114707800	Weak transcription	HMEC	breast
12	chr5:114702600-114712000	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr5:114702600-114712800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr5:114702600-114713000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr5:114702800-114707000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:114702800-114707800	Weak transcription	HSMMtube	muscle
17	chr5:114703000-114707600	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr5:114703000-114707600	Weak transcription	NHDF-Ad	bronchial
19	chr5:114703000-114707800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr5:114704200-114706600	Enhancers	H1 Cell Line	embryonic stem cell
21	chr5:114704600-114706600	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr5:114704600-114706800	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr5:114704800-114706800	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr5:114705400-114707600	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:114705600-114709600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr5:114705800-114708000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr5:114706200-114706600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr5:114706200-114706600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr5:114706400-114707600	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:114706400-114707600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr5:114706400-114713200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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