Variant report

Variant	rs558861866
Chromosome Location	chr10:54115532-54115533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532194	chr10:53746620-54735550	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	nsv895399	chr10:53900872-54219820	Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1054951	chr10:54115222-54175982	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:54112400-54115600	Weak transcription	HUVEC	blood vessel
2	chr10:54113400-54117200	Enhancers	HepG2	liver
3	chr10:54113800-54116000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:54114000-54116200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:54114000-54116400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr10:54114000-54118600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:54114200-54115600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:54114200-54117400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:54114400-54115600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:54114400-54115600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:54114400-54115600	Weak transcription	HSMM	muscle
12	chr10:54114400-54118800	Weak transcription	HMEC	breast
13	chr10:54114400-54119200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr10:54114600-54115800	Enhancers	NHEK	skin
15	chr10:54115000-54116400	Enhancers	Fetal Intestine Small	intestine
16	chr10:54115400-54116200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:54115400-54116400	Enhancers	Osteobl	bone

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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