Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs41279582	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55873909	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs55908594	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs56046664	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs56156710	0.87[AMR][1000 genomes]
rs73118200	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73120213	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73120220	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73120230	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73120241	0.84[EUR][1000 genomes]
rs73120243	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73120259	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73120268	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73120282	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73120287	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73122226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs73122288	0.82[AMR][1000 genomes]
rs73122296	0.82[AMR][1000 genomes]
rs740066	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs741265	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7776921	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7778313	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7803476	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7811443	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932229	chr7:38248340-38727527	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv830966	chr7:38393663-38602553	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:38502600-38549400	Weak transcription	Fetal Stomach	stomach
2	chr7:38502800-38533800	Weak transcription	Aorta	Aorta
3	chr7:38524000-38543400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr7:38524200-38545000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:38528600-38553000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

Quick Search: