Variant report

Variant	rs558866274
Chromosome Location	chr14:65017752-65017753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65005373..65008937-chr14:65014849..65020282,8	MCF-7	breast:
2	chr14:65005138..65007971-chr14:65016762..65019337,2	MCF-7	breast:
3	chr14:65006961..65009286-chr14:65016299..65018796,2	K562	blood:
4	chr14:64971147..64972847-chr14:65015662..65018406,2	MCF-7	breast:
5	chr14:65015799..65018122-chr20:55818007..55820214,2	MCF-7	breast:
6	chr14:64969437..64972776-chr14:65017251..65021474,5	MCF-7	breast:
7	chr14:65017028..65018763-chr14:65046297..65047824,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101144	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564907	chr14:65011509-65018663	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv12236	chr14:65014784-65020415	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv442343	chr14:65015653-65019529	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv564909	chr14:65015655-65020267	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1794640	chr14:65017474-65020267	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1796790	chr14:65017474-65020267	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1797409	chr14:65017474-65020267	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1802157	chr14:65017474-65020267	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65016800-65018400	Enhancers	Brain Substantia Nigra	brain
2	chr14:65017000-65018000	Enhancers	Brain Angular Gyrus	brain
3	chr14:65017200-65017800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
4	chr14:65017200-65018400	Enhancers	Hela-S3	cervix
5	chr14:65017200-65021200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:65017200-65021200	Weak transcription	Gastric	stomach
7	chr14:65017400-65017800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
8	chr14:65017400-65018000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:65017400-65018000	Enhancers	Brain Germinal Matrix	brain
10	chr14:65017400-65018000	Enhancers	Stomach Mucosa	stomach
11	chr14:65017400-65018600	Enhancers	Brain Hippocampus Middle	brain
12	chr14:65017400-65021000	Weak transcription	Placenta	Placenta
13	chr14:65017400-65021200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr14:65017400-65021200	Weak transcription	Pancreas	Pancrea
15	chr14:65017400-65027800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr14:65017600-65017800	Enhancers	Fetal Intestine Small	intestine
17	chr14:65017600-65018000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr14:65017600-65018000	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr14:65017600-65018000	Enhancers	Rectal Mucosa Donor 31	rectum
20	chr14:65017600-65021200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr14:65017600-65021200	Weak transcription	Rectal Mucosa Donor 29	rectum

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