The 2.0 version of rSNPBase

Variant report

Variant rs55887039
Chromosome Location chr12:56202752-56202753
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:123 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:56144600-56208800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
2 chr12:56149400-56209600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
3 chr12:56152800-56209000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
4 chr12:56160400-56209600 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr12:56163200-56209400 Strong transcription Fetal Thymus thymus
6 chr12:56169800-56203400 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
7 chr12:56169800-56204200 Strong transcription Fetal Muscle Leg muscle
8 chr12:56170200-56204200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr12:56175200-56204200 Strong transcription Primary Natural Killer cells fromperipheralblood blood
10 chr12:56178800-56209200 Weak transcription Stomach Mucosa stomach
11 chr12:56183400-56210600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
12 chr12:56184800-56207800 Weak transcription Fetal Heart heart
13 chr12:56185000-56209400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
14 chr12:56187400-56208400 Weak transcription Psoas Muscle Psoas
15 chr12:56189600-56207600 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
16 chr12:56189800-56208000 Weak transcription Brain Cingulate Gyrus brain
17 chr12:56189800-56208800 Weak transcription Fetal Brain Male brain
18 chr12:56189800-56209600 Weak transcription Brain Substantia Nigra brain
19 chr12:56193200-56206400 Weak transcription Primary T killer memory cells from peripheral blood blood
20 chr12:56193200-56207800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr12:56193200-56209200 Weak transcription Colonic Mucosa Colon
22 chr12:56194600-56202800 Weak transcription iPS-15b Cell Line embryonic stem cell
23 chr12:56195000-56209000 Weak transcription HSMMtube muscle
24 chr12:56195400-56202800 Weak transcription Primary B cells from cord blood blood
25 chr12:56195400-56205000 Weak transcription NHLF lung
26 chr12:56195600-56206200 Weak transcription Colon Smooth Muscle Colon
27 chr12:56195600-56209200 Weak transcription Spleen Spleen
28 chr12:56195600-56210600 Weak transcription Brain Hippocampus Middle brain
29 chr12:56195800-56203000 Weak transcription Gastric stomach
30 chr12:56195800-56203000 Weak transcription HepG2 liver
31 chr12:56195800-56209200 Weak transcription Brain Anterior Caudate brain
32 chr12:56195800-56209600 Weak transcription Fetal Kidney kidney
33 chr12:56195800-56210200 Weak transcription Aorta Aorta
34 chr12:56196000-56205600 Weak transcription ES-I3 Cell Line embryonic stem cell
35 chr12:56196000-56207800 Weak transcription NHDF-Ad bronchial
36 chr12:56196200-56206400 Weak transcription NH-A brain
37 chr12:56196800-56202800 Weak transcription NHEK skin
38 chr12:56197200-56208800 Weak transcription Brain Germinal Matrix brain
39 chr12:56197600-56203000 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr12:56197600-56205600 Weak transcription HSMM muscle
41 chr12:56197600-56209000 Weak transcription Primary hematopoietic stem cells blood
42 chr12:56198000-56208800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
43 chr12:56198000-56209200 Weak transcription HMEC breast
44 chr12:56198000-56209400 Weak transcription Rectal Smooth Muscle rectum
45 chr12:56198200-56202800 Weak transcription HUES48 Cell Line embryonic stem cell
46 chr12:56198400-56205400 Strong transcription Fetal Intestine Small intestine
47 chr12:56198600-56203000 Weak transcription Muscle Satellite Cultured Cells --
48 chr12:56198600-56205800 Strong transcription Fetal Adrenal Gland Adrenal Gland
49 chr12:56198800-56204800 Weak transcription A549 lung
50 chr12:56199000-56205400 Strong transcription Fetal Stomach stomach

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Last update: Aug 31, 2015